Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1012 ATGATTTCAAGGTCTGGTTTCCCAAGTCTGCCTCAAGGCCTGCACAATATAATGTTTCCTGCCTCTGAAGATAATTTGGCTTCACAGTCTGTTGAATCAGCTTCTTCTCTATCAACCTCCCTCCTCTTCAATCTCTCTGTGCTCAAAGAAAAGCTTACTCAGATGCAAACACTCGCGGGTATTCTTATCTCCTCGGGACAGATCCTACCCGACCCAACTTGTTCCACCATAGCCAGCATGAATTCTATCATCCAGGAATTCATCGTCACTGCATCTTCCATGTTGCTCACATACCAACACACGGTTCTTAATTTCTCTCCACGTCCAGGTACTCCTAATACTACTACTTGCACTGAATCCAACTTGGGCAACTATAGCAATAGTACTAATACCATAGCCCAAGATAGAGGGCATAGTATCTTTTCTAGTTCTGATCAAACCCTGGTCTGGTTTGGTATTGAAAGCTATGATAATAACAACAACTGTGCTAATAACCTTAAGGATGATGATCCAAGTGCTGCAATTAGTGAAACCAAGCGAGAATTGTGTCAAGGAGATGAAACCAATGAACAAAAGAGCTGTGATATAATTGAATTGGATGCTGGTGATCTGTTGGCAAAGTACACACATTACTGTCAAATTTGTGGGAAAGGGTTCAAACGCGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTATAAGACCAGTGCTGCCTTGACCAACCCAATGAAGAATTCTGCAGGCAAAGAATGTTCGATGAGCACGATAAGGCCTAAGAAATACTCATGTCCACAAGAAGGGTGTAGGTGGAACCAGAAGCATGCGAAGTTTCAACCTTTGAAGTCAATGATATGCGTGAAGAATCACTACAAGAGAAGCCATTGTCCAAAGATGTACGTGTGCAAGAGGTGCAATCTGAAGCAGTTCTCGGTGCTGTCTGATCTGAGGACACACGAGAAGCACTGTGGGGACGTCAAGTGGCAGTGTTCGTGTGGTACTACGTTTTCAAGGAAAGACAAGCTCATGGGTCATGTTGCTTTGTTCGTTGGGCATGCTCCAGCTGTCACTGGCTTGTCGTGTTCTGGAAAATTGTTAGAGCAGCAGGCATTGCAACTGCAGATAGATGGTAGTTCAAGAGGATATGTTTGA 1158 0.4396 MISRSGFPSLPQGLHNIMFPASEDNLASQSVESASSLSTSLLFNLSVLKEKLTQMQTLAGILISSGQILPDPTCSTIASMNSIIQEFIVTASSMLLTYQHTVLNFSPRPGTPNTTTCTESNLGNYSNSTNTIAQDRGHSIFSSSDQTLVWFGIESYDNNNNCANNLKDDDPSAAISETKRELCQGDETNEQKSCDIIELDAGDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALTNPMKNSAGKECSMSTIRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDVKWQCSCGTTFSRKDKLMGHVALFVGHAPAVTGLSCSGKLLEQQALQLQIDGSSRGYV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1012 385 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Dere08g1012 385 Pfam C2H2-type zinc finger 210 232 - -
Dere08g1012 385 SMART c2h2final6 264 297 IPR013087 -
Dere08g1012 385 SMART c2h2final6 302 324 IPR013087 -
Dere08g1012 385 SMART c2h2final6 210 232 IPR013087 -
Dere08g1012 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Dere08g1012 385 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 359 IPR044300 GO:0010044|GO:0010447
Dere08g1012 385 SUPERFAMILY beta-beta-alpha zinc fingers 208 235 IPR036236 -
Dere08g1012 385 FunFam Zinc finger protein 574 209 234 - -
Dere08g1012 385 Gene3D Classic Zinc Finger 300 350 - -
Dere08g1012 385 Gene3D Classic Zinc Finger 188 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1012 Dere-ChrDere08 14067284 14068441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1012 37 357 C2H2 Transcription Factor Family AT5G22890 50.435 8.31e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g1012 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g1012 08 14067284 14068441 Dere08g1012 08 14067284 14068441 ECH