Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g1009 ATGGGTCAGATCCAGTACTCCGAGAAATACTTCGATGATACTTACGAATACAGGCATGTGGTTCTACCGCCTGAAGTGGCCAAACTGCTTCCCAAGAATCGGCTTCTCTCTGAAAATGAGTGGCGTGCAATTGGGGTACAACAAAGCCGTGGTTGGGTTCATTATGCAATTCATCGCCCCGAGCCACACATAATGCTTTTCAGGAGGCCTCTGAACTATCAGCAGCTGCAGGAAAATCAGGCTTAA 246 0.4797 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQLQENQA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g1009 81 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Dere08g1009 81 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Dere08g1009 81 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Dere08g1009 81 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Dere08g1009 81 SMART CKS_2 3 72 IPR000789 GO:0016538
Dere08g1009 81 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Dere08g1009 81 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 81 - -
Dere08g1009 81 FunFam Cyclin-dependent kinases regulatory subunit 1 81 - -
Dere08g1009 81 SUPERFAMILY Cell cycle regulatory proteins 1 78 IPR036858 GO:0016538
Dere08g1009 81 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Dere08g1009 81 Gene3D - 1 81 IPR036858 GO:0016538
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g1009 Dere-ChrDere08 14041832 14042788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g1009 1 81 Core Cell Cycle Gene Families AT2G27960 96.296 3.30e-56 166