Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0996 ATGTCTCGCCGCGGTGGGGGAAAGCAACCTGAGCTTCGCCGGGATCAATCGTCTCCGGCGTCATCCCAATCAAACCCGGGCCGCGGTGCTGGTCGTGGTCGGCCCCGAGGGGGACGGGGACGGGGACGTGGAGCTGGCTCTGTTCCGGCACCGTCTGCTCAGCAGACTCCGACCTTTACTCCGTCGGTGACGACGGATGCTCCTTCTAGTTCGTCGGTTCCGCCGCCGGCTGTATCTTCAACGGTAGCTCAATCTCCGGTTTCGGCTTCATCTTCAATAGGTGCTCTGAGTTCGGAGTTGGAGCAGCAGCTCACATTGCAGTCTCCGGCGCCCTCGTCGTCGAAGGCCATAAGATTTGCTGACCGACCAGATTTTGGTAGAATCGGAAGAAAAATTCAAGTTCGCGCTAATCATTTTCTCGTTAAAGTTGCTGGCCCAGATCCACATCACTACGACGTATCCATAACTCCAGAAGTAACTTCAAAAAAGATAAATAGAGATGTGATGAGTCAGTTAATCCTGTTGTATCGTGAGTCACACTTGGGTAAGCGTACACCAGCTTATGATGGCCGGAAGAGTCTTTACACGGCAGGTCCATTGCCCTTCTTGTCAAAGGAATTTGTGGTGAAGTTGGCAGACAACGAGGAACACACTCGACCCGCTGGTTCAGCGAGAAGGGAACGTGTGCGCGAGTTCAAGGTCACGATTCGTTATGCTTCTACGGCTGATCTCCATCATTTACAACAGTTTCTACGACGTCTACAGCTGGACTGTCCTCAGGAAACTATACAAGCTCTAGATGTTGCTCTGAGGGCATCGCCAGCAGAAAAGTATAATGTTGTGGGGAGGTCATTTTTCTCACCAAATTTGGGTCGAACGGGTGAGCTTGGTGCGGGTTTAGAATACTGGAGAGGATATTATCAGAGCCTTCGCCCGACCCAGATGGGGCTTTCCCTTAATATTGATGTATCTGCCAGGGCATTCTACGAACACATCTTTGTGACTGACTTTGTTGCAAAACATTTTAATTTTAATTCTTCAAGGCCTCTGTCTGATCATGACCGTCTTAAGGTTAAGAAAGCTTTGAGAGGAATTAAGGTTGAACTTACTCATGGTCAGAATACTAAAAGTTACAAAGTTACTGGAGTCTCAAAAGAACCACTCAGCGAGTTAACGTTTCTTCTTGATGACAAGAAAACAAGAGCAACTGTTGTTCAGTATTTTCGTGAGAAATATAATGTTCAACTTAAGTATTTGGCCTTTCCTGCCCTCCTAGCTGGGAGTGACACAAAGCCTATTTACTTGCCTATGGAGCTTTCTAAGATTGCAGCTGGACAAAGGTACACGAAGAAATTGGCTGAGAATCAAGTAACTGAACTTTTGAGAGCAACCTGTCAGCGACCTTATGACAGGGAAAAAGACATTAGAGAGATGGTTAGGCATAACAATTTCAACGGAGACAGAGTTGTGCATGAATTTGGAATTGAAGTTAGCGGGGAACATGTGGTGTGTGATGCACGTGTTTTGCCTCCTCCAAGGCTTAAGTATCATGAAACCGGGAGAGAATCAAGTGTTGAACCCTCCTGCGGTCAGTGGAATATGATAAACAAGAAAATGATTGATGGTGGGAATGTGCAATATTGGACTTGTCTCAACTTTTCTCTTCGAGTCAACAGAGATTTGCCATTTCAGTTCTGTGATGAGTTGGTTAATATGTGTACCAGCAAGGGAATCATTTTCAATAGGAATCCATCACTTCCTATAAATTCAGCTCATCCTAGTCAGATTGAGAGAGCTCTGAGAGATGTTTACAAGCACTCTCAGGGGAAACTTCAGTTGTTGATTATAATCTTGCCTGATATCAAAGGTTCTTATGCAAAGATAAAACGCATATGTGAAACGGAATTGGGTATAGTGTCTCAATGCTCTCAACCCAGGCAAGCTTCAAAGTTACAAAAGCAATATCTTGAAAACTTGGCCCTCAAGATTAACGTTAAGGTTGGTGGACGAAATACAGTGTTAAATGATGCAGTTCAAAGAAGAATTCCTCATGTGACTGATCGCCCTACGATAATCTTCGGTGCTGATGTGACACATCCTCAGCCAGGGGAGGACTCAAGCCCTTCTATAGCGGCCGTAGTAGCATCCATGGATTGGCCAGAGGTCACCAAGTACAGGGGAATTGTTTCTGCCCAGTCTCACCGTGAGGAAATCATACAAGATCTTTATAATTCTTATCAGGATCCTCAGAAGGGAACTGTCCATGGTGGAATGATTAGAGAGCTACTTCTTGCATTCTATAGATCAACCAAGTTTAAGCCGGACAGGATTATATTCTACAGAGATGGAGTCAGTGAAGGTCAATTCAGTCAGGTCTTGCTTTATGAGGTGGATGCAATAAGAAAGGCTTGTGCCTCGTTAGAGGAAGGATATCAACCTAGAGTAACCTTCGTGGTGGTACAGAAAAGGCATCACACCCGTCTCTTTCCTAAAGATCATAATAGTCGTGATCAGACTGATAGAAGTGGAAATATCCTACCAGGTACTGTTGTCGATACAAATATTTGCCATCCCAGAGAATTTGATTTTTACCTCAACAGCCATGCGGGCATTAAGGGTACTAGCCGACCCACGCACTATCATGTACTATATGATGAAAACGGCTTCAAGTCTGATGAGTTGCAGACTTTAACAAATAATTTATGTTACACGTATGCAAGGTGCACCAGATCAGTTTCAATAGTTCCTCCTGCTTACTATGCTCATTTGGCTGCTTTCCGTGCTCGATACTACATTGAAGGTGAGACATCGGACATTGATACTGGAAGTGGAAGTAGGAACGTTAACGTGGTGGTGACCCTTCCAGCAATCAAGGAGAATGTCAAAAATGTTATGTTTTACTGCTGA 2907 0.4503 MSRRGGGKQPELRRDQSSPASSQSNPGRGAGRGRPRGGRGRGRGAGSVPAPSAQQTPTFTPSVTTDAPSSSSVPPPAVSSTVAQSPVSASSSIGALSSELEQQLTLQSPAPSSSKAIRFADRPDFGRIGRKIQVRANHFLVKVAGPDPHHYDVSITPEVTSKKINRDVMSQLILLYRESHLGKRTPAYDGRKSLYTAGPLPFLSKEFVVKLADNEEHTRPAGSARRERVREFKVTIRYASTADLHHLQQFLRRLQLDCPQETIQALDVALRASPAEKYNVVGRSFFSPNLGRTGELGAGLEYWRGYYQSLRPTQMGLSLNIDVSARAFYEHIFVTDFVAKHFNFNSSRPLSDHDRLKVKKALRGIKVELTHGQNTKSYKVTGVSKEPLSELTFLLDDKKTRATVVQYFREKYNVQLKYLAFPALLAGSDTKPIYLPMELSKIAAGQRYTKKLAENQVTELLRATCQRPYDREKDIREMVRHNNFNGDRVVHEFGIEVSGEHVVCDARVLPPPRLKYHETGRESSVEPSCGQWNMINKKMIDGGNVQYWTCLNFSLRVNRDLPFQFCDELVNMCTSKGIIFNRNPSLPINSAHPSQIERALRDVYKHSQGKLQLLIIILPDIKGSYAKIKRICETELGIVSQCSQPRQASKLQKQYLENLALKINVKVGGRNTVLNDAVQRRIPHVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQSHREEIIQDLYNSYQDPQKGTVHGGMIRELLLAFYRSTKFKPDRIIFYRDGVSEGQFSQVLLYEVDAIRKACASLEEGYQPRVTFVVVQKRHHTRLFPKDHNSRDQTDRSGNILPGTVVDTNICHPREFDFYLNSHAGIKGTSRPTHYHVLYDENGFKSDELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDIDTGSGSRNVNVVVTLPAIKENVKNVMFYC 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0996 968 Pfam PAZ domain 356 460 IPR003100 GO:0005515
Dere08g0996 968 Pfam Mid domain of argonaute 527 605 IPR032473 -
Dere08g0996 968 Pfam Piwi domain 615 932 IPR003165 GO:0003676
Dere08g0996 968 CDD PAZ_argonaute_like 334 443 - -
Dere08g0996 968 ProSiteProfiles Piwi domain profile. 613 933 IPR003165 GO:0003676
Dere08g0996 968 Pfam N-terminal domain of argonaute 130 270 IPR032474 -
Dere08g0996 968 Pfam Argonaute linker 1 domain 281 330 IPR014811 -
Dere08g0996 968 MobiDBLite consensus disorder prediction 14 28 - -
Dere08g0996 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 110 934 - -
Dere08g0996 968 FunFam protein argonaute 10-like 681 968 - -
Dere08g0996 968 ProSiteProfiles PAZ domain profile. 332 444 IPR003100 GO:0005515
Dere08g0996 968 MobiDBLite consensus disorder prediction 1 83 - -
Dere08g0996 968 SUPERFAMILY PAZ domain 327 485 IPR036085 GO:0005515
Dere08g0996 968 Gene3D - 508 676 - -
Dere08g0996 968 SMART DUF1785_2 279 331 IPR014811 -
Dere08g0996 968 FunFam Argonaute 10 508 675 - -
Dere08g0996 968 Gene3D paz domain 326 448 - -
Dere08g0996 968 Pfam Argonaute linker 2 domain 470 516 IPR032472 -
Dere08g0996 968 SUPERFAMILY Ribonuclease H-like 597 933 IPR012337 -
Dere08g0996 968 Gene3D - 681 968 IPR036397 GO:0003676
Dere08g0996 968 MobiDBLite consensus disorder prediction 49 83 - -
Dere08g0996 968 SMART PAZ_2_a_3 336 466 IPR003100 GO:0005515
Dere08g0996 968 CDD Piwi_ago-like 489 932 IPR045246 -
Dere08g0996 968 SMART Piwi_a_2 613 933 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0996 Dere-ChrDere08 13928123 13934141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0996 47 968 Eukaryotic Initiation Factors Gene Family AT1G48410 59.306 0.0 1102