Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0994 ATGGCGGAGGACCGCAACGGCGATAAGAATGAGAACAGTGATTACAGTTCGGAGGACGAAGGAACTGAGGATTACAGGCGAGGAGGTTACCATGCGGTTCGAATTGGGGATACTTTCAAAAATGGGTGCTATGCGGTGCAGAGCAAGCTTGGGTGGGGTCATTTTTCTACAGTGTGGCTTGCCTGGGACATTCAGAGATCGCGTTATGTAGCCCTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCGATGGATGAAATAAAGATTCTCAAACAGATTTCAGAGGGGGACCCTGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTCAAGCATTCAGGGCCTAATGGTCAGCATGTATGTATGGTTTTTGAATTTCTGGGTGACAATCTTCTGACACTTATCAAGTATAGTGATTACCGAGGAGTTCCTCTCCCCATGGTCAAAGAAATTTGTTACCATATTTTGGTGGGTTTGGATTATTTGCATCGGGAACTCTCCATAATACATACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCATCTAAGGATCGCAGAAAGTCAGGTGCCCCACTCATTCTTCCTAGCACCAGGGATAACTCTGCATCCAAGAACGAGGTCACTAAAGACAATATTAGCTTGAATGGAGATCTGACCGAGAACCAGAAAAAGAAAATGTATGGTAAGGCTAAGAAGGTTGAGAATGAAATTGCTGATGAAGCTGAGGATTCTAAAGATCATGACCAAGAAGGTTCTAGCAATGATCTGAAATCAAATGCTGAATCTGTTGAAGATAAACCCAATAATTCTGTGAGTAAAGATGAATCAACAAAGACTTTTGAAACTAAGGATGTTCCGCAAGGACGTCATAGTCACAGGAAAAGTAGCCGTTCCATGAGAAAGAAGTTGCTTGCTGCTGTTGATCTAAAGTGCAAACTGGTTGATTTTGGCAATGCGTGTTGGACTTATAAGCAATTCACAAATGATATTCAAACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATATTCTACTCCAGCAGATCTATGGTCTTTTGCTTGCATTTGCTTTGAGCTTGTCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCATTAGGTGGCCGCTATTCTCGGGAATTTTTCAATAGATATGGTGATCTGAGGCATATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTCCTGATGGAGAAGTACGATTTCAGTGAGCAAGACGCAAATGACATGGCCAACTTCCTTGTTCCAATACTTGATTTTGTCCCTGAAAATAGGCCAACAGCTGCTCAGTGCCTTAGTCATACGTGGTTCAGTGCTGGTCCTCGGATTCTTCAGCCCTTGGCTAATACTGTACAACCTGAGGCTATGGATGGGGAAATGTCTGAAAAACCGAAGCGGGATAAGGCTGAGCAGGAAGCATTGGAAATTGGTGTGGGGAATATAGCCATTGATGGAACTCCTAAACCACTTAAAAAGTCCCAGTCGATAAAGTGA 1620 0.429 MAEDRNGDKNENSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYAVQSKLGWGHFSTVWLAWDIQRSRYVALKIQKSAQHYTEAAMDEIKILKQISEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICYHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDRRKSGAPLILPSTRDNSASKNEVTKDNISLNGDLTENQKKKMYGKAKKVENEIADEAEDSKDHDQEGSSNDLKSNAESVEDKPNNSVSKDESTKTFETKDVPQGRHSHRKSSRSMRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDANDMANFLVPILDFVPENRPTAAQCLSHTWFSAGPRILQPLANTVQPEAMDGEMSEKPKRDKAEQEALEIGVGNIAIDGTPKPLKKSQSIK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0994 539 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0994 539 Pfam Protein kinase domain 316 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0994 539 MobiDBLite consensus disorder prediction 202 228 - -
Dere08g0994 539 SUPERFAMILY Protein kinase-like (PK-like) 39 490 IPR011009 -
Dere08g0994 539 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Dere08g0994 539 MobiDBLite consensus disorder prediction 1 23 - -
Dere08g0994 539 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
Dere08g0994 539 CDD STKc_SRPK 33 479 - -
Dere08g0994 539 MobiDBLite consensus disorder prediction 193 307 - -
Dere08g0994 539 Coils Coil 238 258 - -
Dere08g0994 539 ProSiteProfiles Protein kinase domain profile. 44 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0994 539 FunFam CMGC/SRPK protein kinase 30 129 - -
Dere08g0994 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Dere08g0994 539 MobiDBLite consensus disorder prediction 230 299 - -
Dere08g0994 539 FunFam Serine/threonine-protein kinase SRPK-like protein 309 479 - -
Dere08g0994 539 Gene3D Transferase(Phosphotransferase) domain 1 127 480 - -
Dere08g0994 539 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Dere08g0994 539 SMART serkin_6 44 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0994 Dere-ChrDere08 13907777 13910278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0994 1 530 EF-hand Containing Proteins AT5G22840 67.103 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Dere08g0994 Pkinase 9.4e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0994 08 13907777 13910278 Dere07g0723 07 10585896 10589496 CCT
Dere08g0994 08 13907777 13910278 Dere08g0994 08 13907777 13910278 ECH