Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0982 ATGGAAGACCAGAATTGTACGGTCACAAAGTCTCCGACCGAGACACCTGGGAGCCCGGAGGCAGAGGGTGGCGACGCTGTGCCGGACGTAGTGGGAGCCGTCGGAGCTGAGACAGCCTTGAACTCTGTCGCTGCTGTCGGAGGTGAAAAGGCCGAGGTTGTGGGTTCGGAAATGGGGGTGAAGAAGAGAAGGGGGAGGCCTAGGAAGTACGATTTAAATGGGAACCTGCTGTCTCCGGCGTCGGCGCCGTCAGGCTTTTCCGATTACTCGTTTGGGAGCTCTGCTAAGCGAGGCAGAGGAAGGCCTCGTGGTTCGGGAAAATTGCAGCTTTTGGCATCCATTGGTGGAGTTGTTGCAGACACAGCTGGGGGAGGCTTCACTCCCCATGTAATGATTGTGAATACCGGAGAGGATGTGGTGAGTAAAATATTATCATTTTCTCTCAACGGCCCTCGAGCTGTTTGCGTACTTTCTGCTTCTGGTGCAGTTTCCAGTGTCACCATTCGCCAACCTGGTTCTTCTGGTGGTGTTTTGAGATTTGAGGGCCGTTATGAGATTATATCTTTAACTGGATCATACACCATTGGTGGTGCTCGTCGCAGAAGTGGCATGTTGAGCGTTTCTCTGGCTAAATCTGATGGTAGGGTTTTTGGAGGTGGCGTTGAGGGCTCACTGATAGCGGCTGGACCTATTCAACTAGTTGTGGGCAGTTTCAAGCAAAACATCAGCAAGGAGATCAAAAGGAGACACTCGGCTGGATCTTCTGCAGCTGCCAACATGCCGGCTCATCCTGAAATGACAGAAAGTGAACAGGATGGACTTGTGTCGACAACTAATGGATTACCCAACAACGTCGTCAATCCTGCGACAAGTAACGGAATACCCGACAACGTCATTTCTGCGACAACTAGTGGAATTCCACACGACGTGGTTCCTGCGAGTCAGAATATGTATTCAAATGGGATTATCATGGACTCTCAACACATCGCAGACCATGAAGTGTCCGTTGATATTGATATCAGCGTCGACCCTCAGTTCTGA 1041 0.5101 MEDQNCTVTKSPTETPGSPEAEGGDAVPDVVGAVGAETALNSVAAVGGEKAEVVGSEMGVKKRRGRPRKYDLNGNLLSPASAPSGFSDYSFGSSAKRGRGRPRGSGKLQLLASIGGVVADTAGGGFTPHVMIVNTGEDVVSKILSFSLNGPRAVCVLSASGAVSSVTIRQPGSSGGVLRFEGRYEIISLTGSYTIGGARRRSGMLSVSLAKSDGRVFGGGVEGSLIAAGPIQLVVGSFKQNISKEIKRRHSAGSSAAANMPAHPEMTESEQDGLVSTTNGLPNNVVNPATSNGIPDNVISATTSGIPHDVVPASQNMYSNGIIMDSQHIADHEVSVDIDISVDPQF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0982 346 Gene3D - 128 255 - -
Dere08g0982 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 283 IPR039605 GO:0003680
Dere08g0982 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 239 IPR005175 -
Dere08g0982 346 MobiDBLite consensus disorder prediction 57 77 - -
Dere08g0982 346 MobiDBLite consensus disorder prediction 1 16 - -
Dere08g0982 346 SMART AT_hook_2 96 108 IPR017956 GO:0003677
Dere08g0982 346 SMART AT_hook_2 61 73 IPR017956 GO:0003677
Dere08g0982 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 242 - -
Dere08g0982 346 MobiDBLite consensus disorder prediction 1 28 - -
Dere08g0982 346 CDD DUF296 127 238 IPR005175 -
Dere08g0982 346 ProSiteProfiles PPC domain profile profile. 123 259 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0982 Dere-ChrDere08 13789837 13793229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0982 60 238 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.010 7.45e-54 179