Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0977 ATGCCCTGGAAGATGGATGGAAATCTTTTGTTCGATTTCATTTGGGATTTTCTTTTGGGAGCCCACTTTTTTGATAGCGAAGATGATGAGGATCTCCCATTGATGGCCAAAGAAAATGGAAAACCTGATACAAAGATTGAACAAGCTAAGGTTGGAGCGTCCAAAAATAATGATGCCAAGGTTAATGATTCCAAAAAGCAAGTCAAGGTTGTTGATCCAAAGAATGATGAAGATGAAGACTCTGAAGATGATGAGGATGATGAATCTGATGATGAAGATGATGAAAATGGAGGTTCTGATGAGGATTTGATGGATGCTGATAGCGATAGTGATGAGGAGAGTGAGAGTGATGAAGATGTTGAGGAGACGCCTAAGAAGGTGGAACAGAGTAAGAAGAGACCCAATGAGTCTGCATCAAAAACTCCAGTTTCTGCCAAGAAAGCTAAATCTGGTACTCCTCAGAAGACTGATGCTAAGAAAGGTGGTCACACAGCAACTCCGCACCCTATGAAGAAAGGTGGAAAGAGCCCCAACAGTGAAGCAAAGTCTGGTGGACTATCTTGCAAATCTTGCAACAAGTCTTTCAACTCTGATAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 639 0.421 MPWKMDGNLLFDFIWDFLLGAHFFDSEDDEDLPLMAKENGKPDTKIEQAKVGASKNNDAKVNDSKKQVKVVDPKNDEDEDSEDDEDDESDDEDDENGGSDEDLMDADSDSDEESESDEDVEETPKKVEQSKKRPNESASKTPVSAKKAKSGTPQKTDAKKGGHTATPHPMKKGGKSPNSEAKSGGLSCKSCNKSFNSDSGLQQHNKAKHGGQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0977 212 MobiDBLite consensus disorder prediction 59 75 - -
Dere08g0977 212 ProSitePatterns Zinc finger C2H2 type domain signature. 188 209 IPR013087 -
Dere08g0977 212 MobiDBLite consensus disorder prediction 33 212 - -
Dere08g0977 212 MobiDBLite consensus disorder prediction 120 135 - -
Dere08g0977 212 MobiDBLite consensus disorder prediction 136 151 - -
Dere08g0977 212 MobiDBLite consensus disorder prediction 76 119 - -
Dere08g0977 212 MobiDBLite consensus disorder prediction 180 206 - -
Dere08g0977 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 212 IPR013087 -
Dere08g0977 212 SUPERFAMILY beta-beta-alpha zinc fingers 174 208 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0977 Dere-ChrDere08 13723841 13725530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0977 123 205 C2H2 Transcription Factor Family AT3G44750 52.941 2.18e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g0977 None None None