Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0964 ATGGATGACTGTGCAACTGACATCATCACTGAGACGCGCAGAACTTTGAACCCTAGCGATGGAGGACAAGAAAAGAAGCCGAAGGTGGTAGTGATAATGGGTCCAACTGGTTCTGGGAAGTCCAAGCTCGCTATTGATTTGGCCTCTCACTTTCCGATTGAAGTTATCAATGCTGATTCCATGCAGGTCTACCGAGGCCTTGACGTTCTCACGAACAAAGTTCCTCTCTCGGACCAAAAGGGGGTGCCGCATCATCTTCTGGGTACCATAAGTCCAAACGTGGAATTCACAGCTAAAGAGTTTCGGGATTCTGCTATGCCTCTCATCAATGAAATTTTGGCTCGTAACAGCTTGCCTGTCATAGTTGGGGGTACGAATTATTACATCCAGGCTCTTGTGAGTCCATTCCTTCTAGATGAGTCAGTGGAAGATATGGATGAAACCTCTTTGGATGACCCTCCTGGCATTGCACAGTTGGACAAGAGTTTCATCCCTGAAAAGGACAGTTCAAACAAAAATTATGACCTACTTAAAGATATTGATCCAGTTGCAGCAAATAGAATGCATCCAAATAACCATAGAAAGATTAGTCAATACCTTAGTTTGTATGCTCGCACTGGAGTTCTTCCAAGCACAATTTTCCAAGGAAAGGCTGCAGAGAAGTGGGGTCAAGTTGGTAATTTGAGATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTACTGGACAGATATGTGGAACAGAGGGTAGATTGCATGATGGATGCTGGATTACTTAATGAAGTCTATGACGTGTACAATCTGAATGCAGATTATACTCGAGGCTTGTGGCAGGCTATTGGTGTTCGTGAATTTGAACCTCTTCTGGAAACCTGTGAAATTGAAGACATCGACAAGAGAGAGATGGAATTCACTGAGGAGTCTAGCAGAGAAAAGGGTGATAAGTTGTTTGATGATGATCTGAGGGTGCTGCTGAAGCTGTCTTCTGATACTAAATCCCCAATGCTTTTGGAGGAAGCAATTGAAAAAGTAAAGGTTAATACACGGAGACTAGTTCGCCGTCAGAAGAGGATGCTTAATCGACTGCAAAAATTGTTTGATTGGACCATACACTATGTTGATTCCACGGAATCATTATCAAGCAAATCAGATGATATATGGATTGGCCAAGTGGTTGAACCTGCCATCAAGGTAATTAGATCTTTCCTTAGTAAGAATGAAAGCTTGCCATCCACATGTGGGACGTCAAATAGCACTGGGATGAAAATCATTCAGAGGGACCTCTGGACTCAATACACATGCAAGGCCTGCGGAGATAGGGTGCTCAGAGGAATACATGAATGGGAACAACACAAAGAGGGCCGTGGACACCGGAAACGAATTTCTAGTCTCAAGAACAAATCACGAGGTCTCAGTTTGGTGGAACAGTAG 1437 0.4363 MDDCATDIITETRRTLNPSDGGQEKKPKVVVIMGPTGSGKSKLAIDLASHFPIEVINADSMQVYRGLDVLTNKVPLSDQKGVPHHLLGTISPNVEFTAKEFRDSAMPLINEILARNSLPVIVGGTNYYIQALVSPFLLDESVEDMDETSLDDPPGIAQLDKSFIPEKDSSNKNYDLLKDIDPVAANRMHPNNHRKISQYLSLYARTGVLPSTIFQGKAAEKWGQVGNLRYDCCFICVDASLPVLDRYVEQRVDCMMDAGLLNEVYDVYNLNADYTRGLWQAIGVREFEPLLETCEIEDIDKREMEFTEESSREKGDKLFDDDLRVLLKLSSDTKSPMLLEEAIEKVKVNTRRLVRRQKRMLNRLQKLFDWTIHYVDSTESLSSKSDDIWIGQVVEPAIKVIRSFLSKNESLPSTCGTSNSTGMKIIQRDLWTQYTCKACGDRVLRGIHEWEQHKEGRGHRKRISSLKNKSRGLSLVEQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0964 478 Pfam IPP transferase 62 359 - -
Dere08g0964 478 Gene3D - 157 217 - -
Dere08g0964 478 Gene3D - 27 429 IPR027417 -
Dere08g0964 478 Hamap tRNA dimethylallyltransferase [miaA]. 29 382 IPR018022 GO:0008033
Dere08g0964 478 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 29 294 IPR018022 GO:0008033
Dere08g0964 478 FunFam tRNA dimethylallyltransferase 429 472 - -
Dere08g0964 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 272 IPR027417 -
Dere08g0964 478 MobiDBLite consensus disorder prediction 458 478 - -
Dere08g0964 478 Gene3D Classic Zinc Finger 430 472 - -
Dere08g0964 478 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 405 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0964 Dere-ChrDere08 13589465 13593131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0964 16 468 C2H2 Transcription Factor Family AT2G27760 55.844 3.75e-177 503