Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0960 ATGAACGGACGTGATTTGATCATCTCCAAGGTTCAGGATTTTGCCACCAAGCACTTAAAAACCCTAGTTATATATATCCCCTTGTCCCCGACCGCGGCGCCTCCCTCTGCAGAAACCCTAAGAGCAACAAAGCAGTCTCCTATCATTCTAGCAAAAATGAAGGTGATCGCTGCGTATTTGCTGGCCGTCTTGGGAGGGAACACAACCCCTTCAGCCGACGATCTGAGGGACATCCTTGGCTCAGTTGGAGCTGAGGCTGATGATGAAAAGATTGAGTTGCTCTTGTCCGAAGTCAAGGGCAAAGATATCACCGAGCTAATCGCTGCCGGAAGGGAGAAGTTGGCTTCAGTGCCTGGTGGTGGTGGTGCGGTTGCTGTTGCTGCAGCTCCTGCGGGAGGTGCTCCTGCTGGTGGTGCTGCACCTGCTGCCGAGGCAAAGGAAGAAAAGAAGGTGGAAGAGAAGGAGGAGTCCGATGACGACATGGGTTTCAGTTTATTCGACTAA 504 0.5218 MNGRDLIISKVQDFATKHLKTLVIYIPLSPTAAPPSAETLRATKQSPIILAKMKVIAAYLLAVLGGNTTPSADDLRDILGSVGAEADDEKIELLLSEVKGKDITELIAAGREKLASVPGGGGAVAVAAAPAGGAPAGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0960 167 Hamap 50S ribosomal protein L12 [rpl12]. 54 167 IPR027534 GO:0003735|GO:0005840|GO:0006414
Dere08g0960 167 MobiDBLite consensus disorder prediction 130 167 - -
Dere08g0960 167 Gene3D - 52 111 IPR038716 -
Dere08g0960 167 MobiDBLite consensus disorder prediction 143 157 - -
Dere08g0960 167 CDD Ribosomal_P2 53 167 IPR044076 GO:0002182|GO:0003735|GO:0022625
Dere08g0960 167 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 53 167 IPR044076 GO:0002182|GO:0003735|GO:0022625
Dere08g0960 167 FunFam 60S acidic ribosomal protein P2 51 111 - -
Dere08g0960 167 Pfam 60s Acidic ribosomal protein 70 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0960 Dere-ChrDere08 13522810 13524192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0960 53 167 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.565 8.93e-33 111