Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0959 ATGAACGGCGAAAGCCGAAGACGGGACCGGAGAGACCCCCGCAGATCCAAGAAGCAGAAGCTAATCCGCAACGCCGTAGAAGAACTCGAGTCAAAATTAGGGTTCGATCTTTTCTCAGAGGGTGATAAACGACTTGGATGGTTACTCAATTTTTCATCCTCATCTTGGGAGGATGAAGATACACACAAAGTCTACAGTTGTGTAGATCTATATTTTGTTACACAGGATGGTTCTACTTTCAAGTCAAAGTACAGGTTTTGCCCTTATTTCTATGTGGCTACAAAGGATAAAATGGAGATGGATGTTGAATCATACTTGAGACGGCGTTATGAAAGTCAGATTGCTGATATTGAAATTAAAGAGAAGGAAGACCTTGATCTTAAAAACCATTTGTCTGGATTACAAAAATCTTATTTAAAGCTATCCTTTGATACCGTGCAACAATTGATGAATGTGAAGAGTGATCTGATGCATGTTGTTGAAAGAAATCAGGCAAAATCTGATGCAGCAGAAGCTTATGAATCCATATTAACAGGAAGAAGGGAACAAAAACCTCAGGATTTTCTAGATTGCGTAGTCGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGATAATGATATACGATGTGGCCAATGGTATGATGTTAGTGTGTCCAGTATTGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGATATAGAGACCACAAAACTTCCATTAAAGTTTCCTGATGCTGAGTATGATTTAATTATGATGATTTCATACATGGTAGATGGACAAGGGTATTTAATCATTAACAGAGAGTGTGTTGGGGATGATATAGAGGATTTGGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACGAATGTTCAAAATGAGGTTGAGCTTCTTAGATTGTGGTTCTCTCATATGCAAGAGGTGAAACCTGGTATATATGTGACGTATAATGGTGATTTCTTTGATTGGCCATTTGTGGAAAGAAGGGCAGCCCATCATGGATTCAAAATGAGTGATGAGTTGGGTTTTCAATGTGACAATAATCAAGGGGAATGCCGAGCTAAATTTGCTTGCCATTTAGATTGTTTTGCTTGGGTAAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCTGTTACGAAAGCAAAGTTGGGTTATGATCCCCTAGAGGTGAACCCTGAGGATATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCTGTAGCAACTTATTACTTATATACAACCTATGTTCATCCCTTCATTTTTTCTCTTGCAACAATTATACCCATGTCACCTGATGAGGTTTTGCGTAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTCATGGTCCAGGCGTACAAAGCTAATGTGATCTGCCCTAACAAACACCAATCCGATCCAGAGAAGTTTTACAACAATCACCTTCTTGAGAGTGAAACATACATAGGTGGCCACGTGGAATGTCTTGAAAGTGGTGTATTTAGATCTGATCTTCCAACTAGTTTTATACTTGAACCTTCAGCCTATGAGCAATTGATCAACAACCTTGATCGAGACCTGCAATATGCTGTAAAAGTAGAGGGTAAGATGGACTTGGATTCCGTCTCTAATTATGATGAAGTGAAGAAAGCTATCATGGAAAAGCTTATGAAATTGCGAGATGAGCCAATACGTGAAGAATGCCCCCTTATTTATCATCTGGATGTAGCTGCTATGTATCCTAACATAATCTTAACAAATCGGCTTCAGCCACCTTCAATAGTTACGGATGAAGTCTGTACTTCATGTGATTTCAACCGGCCTAGAAAGACTTGTCTTCGGAAACTTGAGTGGGTTTGGCGTGGAGAAATGTTCATGGCAAAGAAAAGTGATTATTATCATATAAAAAAGCAGATTGAGTCAGAGTTTGTTGAAGGTGCTGATAGGCAGTCATCAAAATTATTTCTTGACCTGCCCAAGTCAGAGCAGCAATCCAGGCTAAAAGAGCGTCTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTTGACAAACCAGTAACTGAACTTCGTGAAGCAGGGATCTGTATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTTCGGGATAGAAGATATGAATACAAAGGTCTTAATAAGGTTTGGAAGGGAAAGTTGTCAGAAGCCAAGGCCAGTGGAAATTCTATAAAGATTCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCGCACAAATGTATACTGAATTCCTTTTATGGATATGTCATGCGCAAGGGAGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAGCCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACTAAAGACTCAAAGAAGAAATTGACTATCTCATACCCTTGTGTAATGCTCAATGTTGATGTGGCGAGGAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATTAGAAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAAGTGGATGGACCGTACAAGGCAATGATCCTTCCTGCTTCCAAAGAAGAAGGAATTTTAATTAAGAAACGTTATGCTGTTTTTAATGATGATGGAACCCTAGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTTATAAAAGTTTTCCAGGCTGAGCTTTTCGACAAGTTTCTCCATGGGTCAACCATAGAGGAATGCTATTCAGCTGTTGCTTCTGTCGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAGCAGAAGTCTTGCGCTGTTACCACTGCTAGACGGCTTGCGGACTTTCTTGGTGACACAATGGTCAAAGATAAAGGCCTCCGCTGTCAGTACATAGTAGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTCCCTGTGGCAATATTTGAAACTGATGCTGAAATAATGAAGTTCTATGTCCGTAAATGGTGCAAGGTGTCATCTGATGTTGGCATTCGATCCATTGTTGACTGGTCCTATTACAGGCAACGGTTGAGCTCTGCAATTCAAAAAATTATTACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTGATTCATCCTGATTGGTTGCATAAAAAGGTTCGTGAGAAGCAGGACAAATATCGCCAACGAAAATTAGTTGATGTCTTCAACTGCATGAACAGGGATCAACTCTCTAAAAAGCATATTAATTCTGATAATGTCTGCCTTGTGATGGATGAAGAGACTATTAATGATTTGGAGGACTTTGGAAACAAGCCCAGGAGTACTATTAGTGGACCAAGACCAATTATACGACATTTTGAAGCTAATAATGGAAAGCATTCAGTGAAGCCTAATGGCAAAGATGATTCTGGGCAACAGCATAATGATCAATCTAGCAAGCGTGAGCCACTTGCACAATGGCAACAAAATGGACTGTCATGTGAAAATGTTGACAGAACTGTAGATTATCAAGGTTGGCTTCAGACAAAGAAGAGAAAGTGGAAAGATATAATAGCAAGAAGAAAGAAGCAAAGATTGGAGAATTCAAAGGAATCAGACCGTGCTAGTGGCTCTCTTGAAAGACTGAGTAATATGATAGATCATAAAGCTCAGGGAAGAAGTAACGTTGATTCATATTTTAGAAGGCATGAGGTAGTCCTGACACGGTCATACTGGCAGATAATACAGCTGATTTACAGTTCACAGATTGGTCAATGTTTTGCTTGGGTTGTTGTTGATGGGGTTATGCTTAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCTAGATCACCTATTACTGAACAGTTTCTGGGTAAGAATGTCAACAAGACTCTTCCACATGGAAGGCCTAGTTATAACCTGTATGAGGTTACAATTGATGAAGTTCAATTTAAAGAAACAAGCAAAAAGCTTGTAGCTCTTTTAGCAGATCCTGATGTTGAGGGAATATATGAAACGAAAGTGCCACTGGAGTTTAATGCCATAGTCCAGCTTGGTTGTGTATGTAAGGTGGGAAAAACTGCTAAAAAACGTAGTCTACAGGAACCTTGGAATCTGAGTGAATTGCACATGATGACTACAACAGAATGTGCTTATCTTGAGCATTCCATATCCTTCTTTTACTTGTATCACAGCATCTCTGAGGGGCGGGCTCTATACGTTGGATATTTTCCTGTATCAAAAGCAATATCTCTTGTGGTAGTTAATCCCTATCAAAACAAAGATCTATCTCCAATTTTTCTTGAAAGACAATTCCGTGATGCTTGTGAAGCTTTGTCAGTTGAGACACCTCCCAAAAATGGTATTAATTTTAAGCTGGACTATGTTTCACAAGTCAAGGATGCTGAAACATTGATGCAAAGAGCAATAAATGATCACAGGAATGAACATCATGGGCCTATGGTTGCTGTCATTGAATGTCCAAATCCCCAACTAATGAAATTGGCTATTCGAGCTCTAGATGACTTCCCATGCCTAACCATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCAAAAACTGGAATGCAACGCTGTGCTGCATCAGTCCAGTGGCTGAACGAGAGGATTTCTCTATCAAGATATGCCCATGTACCATTGGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATATCTTCTTTTCTAGAGTGTTGCGTGATAATCAACAGGTACTATGGATATCAGATGACGGCCTTCCAGATTTAGGTGGAATTAATGAAGAAGAGACATGTTTTGCTGATGAGGTCCACCAACCTGTGCTTACCTATCCTGGAGCTTACAGAAAAGTTACAGTGGAGCTAAAGGTTCACCACCTTGCTGTGGATGCTCTTCTGAAAAGCAATCAAGTTAATGAATTGGAGGGAGGGGCTTTGTTAGGATTTGATCATGACATCAACTCTGGACCATTTGCCATAAATGATCAAAATGGCTTTGATGAGGCTACCTCATGTGCACATGCTTTTCGTGTCCTAAAGCAGTTGATCCAGCGATGCCTAGCAGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATATTGCAACATCTATATCGATGGCTATGCAGTCCTCAATCAAAACTTCATGATCCAGCTCTTCACCGGCTACTCCACAAGGTCATGCGAAAGGTCTTTGCTTTGTTATTGGCAGAGCTCCGTAAATTGGGTGCAACAATTGTTTTTGCAAACTTCTCAAAAATTATTGTAGACACAGGAAAATATGATCTGTCTTCGGCCAAAGCTTACTGTGATAGTTTGTTACGAACTCTTCAATCTAGAGATTTATTTGAATGGATTGAGCTTGAACCACTTCAGTTCTGGAACTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAGCAAAATTGGATGAAGCTATAAATGATGAATCTCAAGTTGACATTATATCGAGTTGGAATATTGCCGAATACTTACCAAAGAAAATCCAGGATCACTTCGTTTTCATTGTTTCCCAATTCATGTACATTCCCTGGATCTATGCACAAAGACAAGCTGCAATACGGGCTTCATTGCAAAATGGAGACTCCTGCACCCCATCAATTACTATTGGGACTGCGGAGAATTTTGAATCACATATCATAGAATATACTAAAGGACAGATCAGCTCTTACTTTGCAGACAAACTTCTGGGAATTGTTCGTGATATCGTGCTTCATATGAAGGAGATGAGATCAGAAAATGACCAGAATGTTTCATCTGGCAATCCCCAACTTGCAGGTGATTTCCACAGAGGGGATGCAGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCTTGGCCCTGGACCAGAACGTGCAGCATGATGTTCTGGTCATGAGAAAGAATTTGTTGAGATTTGTTCGTGTCAGGGAGTTCGCGCCAGAAGCTGAGTTTCGTGATCTCAGTCAGTCCTTTGTCTTACCCAATGTCATCTGCAGCTACTGTAATGATTGCAGAGACTTGGATTTGTGCCGTGACTCAGCTTTATTAAGTCAGGAATGGCATTGTGGCGTGCCGCAATGTGGGCAGCCTTATGACCATGCGGTGATGGAAAATGCACTTCTTCAGATTGTACGACAGAGAGAACGGCTGTACCACCTTCAAGATCTGGTGTGTGTCAGGTGTTACCAGGTGAAAGCTGCTCATTTAGCTGAGCAATGTGCTTGTGCGGGATCATACAAGTGCAAGGAAGATATTACTGAATTTCGCAACAAGATGCAGGTTTTCTTCAACATAGCTGTTCGCCAAAAATTCGAACTTCTTCAAGAATGCACCTCATGGATTCTAGAACTGAGATAA 6645 0.4062 MNGESRRRDRRDPRRSKKQKLIRNAVEELESKLGFDLFSEGDKRLGWLLNFSSSSWEDEDTHKVYSCVDLYFVTQDGSTFKSKYRFCPYFYVATKDKMEMDVESYLRRRYESQIADIEIKEKEDLDLKNHLSGLQKSYLKLSFDTVQQLMNVKSDLMHVVERNQAKSDAAEAYESILTGRREQKPQDFLDCVVDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSIGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEVELLRLWFSHMQEVKPGIYVTYNGDFFDWPFVERRAAHHGFKMSDELGFQCDNNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDLPTSFILEPSAYEQLINNLDRDLQYAVKVEGKMDLDSVSNYDEVKKAIMEKLMKLRDEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTSCDFNRPRKTCLRKLEWVWRGEMFMAKKSDYYHIKKQIESEFVEGADRQSSKLFLDLPKSEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKKLTISYPCVMLNVDVARNNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKVSSDVGIRSIVDWSYYRQRLSSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKQDKYRQRKLVDVFNCMNRDQLSKKHINSDNVCLVMDEETINDLEDFGNKPRSTISGPRPIIRHFEANNGKHSVKPNGKDDSGQQHNDQSSKREPLAQWQQNGLSCENVDRTVDYQGWLQTKKRKWKDIIARRKKQRLENSKESDRASGSLERLSNMIDHKAQGRSNVDSYFRRHEVVLTRSYWQIIQLIYSSQIGQCFAWVVVDGVMLKIPVSVPRVFYLNSRSPITEQFLGKNVNKTLPHGRPSYNLYEVTIDEVQFKETSKKLVALLADPDVEGIYETKVPLEFNAIVQLGCVCKVGKTAKKRSLQEPWNLSELHMMTTTECAYLEHSISFFYLYHSISEGRALYVGYFPVSKAISLVVVNPYQNKDLSPIFLERQFRDACEALSVETPPKNGINFKLDYVSQVKDAETLMQRAINDHRNEHHGPMVAVIECPNPQLMKLAIRALDDFPCLTIPSNARDSQYQILGWQQVAAKTGMQRCAASVQWLNERISLSRYAHVPLGNFELDWLIFTADIFFSRVLRDNQQVLWISDDGLPDLGGINEEETCFADEVHQPVLTYPGAYRKVTVELKVHHLAVDALLKSNQVNELEGGALLGFDHDINSGPFAINDQNGFDEATSCAHAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHRLLHKVMRKVFALLLAELRKLGATIVFANFSKIIVDTGKYDLSSAKAYCDSLLRTLQSRDLFEWIELEPLQFWNSLLFMDQYNYGGIPAKLDEAINDESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWIYAQRQAAIRASLQNGDSCTPSITIGTAENFESHIIEYTKGQISSYFADKLLGIVRDIVLHMKEMRSENDQNVSSGNPQLAGDFHRGDAALEFIKHVCAVLALDQNVQHDVLVMRKNLLRFVRVREFAPEAEFRDLSQSFVLPNVICSYCNDCRDLDLCRDSALLSQEWHCGVPQCGQPYDHAVMENALLQIVRQRERLYHLQDLVCVRCYQVKAAHLAEQCACAGSYKCKEDITEFRNKMQVFFNIAVRQKFELLQECTSWILELR 2214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0959 2214 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2212 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Dere08g0959 2214 MobiDBLite consensus disorder prediction 1208 1230 - -
Dere08g0959 2214 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Dere08g0959 2214 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Dere08g0959 2214 Gene3D Palm domain of DNA polymerase 753 937 IPR023211 -
Dere08g0959 2214 SUPERFAMILY Ribonuclease H-like 57 467 IPR012337 -
Dere08g0959 2214 Gene3D DNA Polymerase, chain B, domain 1 51 232 - -
Dere08g0959 2214 SUPERFAMILY DNA/RNA polymerases 469 1144 IPR043502 -
Dere08g0959 2214 FunFam DNA polymerase epsilon catalytic subunit 756 937 - -
Dere08g0959 2214 Coils Coil 565 585 - -
Dere08g0959 2214 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Dere08g0959 2214 Pfam Domain of unknown function (DUF1744) 1531 1901 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Dere08g0959 2214 MobiDBLite consensus disorder prediction 1208 1241 - -
Dere08g0959 2214 CDD DNA_polB_epsilon_exo 240 443 - -
Dere08g0959 2214 SMART DUF1744_2 1517 1901 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Dere08g0959 2214 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Dere08g0959 2214 Pfam DNA polymerase family B 756 1065 IPR006134 GO:0000166|GO:0003677
Dere08g0959 2214 CDD POLBc_epsilon 503 1122 - -
Dere08g0959 2214 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Dere08g0959 2214 Gene3D - 238 468 IPR036397 GO:0003676
Dere08g0959 2214 Gene3D - 941 1125 IPR042087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0959 1 2104 Core DNA Replication Machinery Family AT1G08260 71.388 0.0 3081