Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0936 ATGTATAGCAACTTTAAGGAGCAAGCGATAGAGTACGTGAAACGAGCCGTGCAGGAAGACAATGCTGGGAATTACGCGAAAGCTTTTCCTCTGTATATGAATGCATTGGAGTACTTCAAGGTGCATTTGAAGTACGAGAAGAATCCTAAGATTAGAGAAGCGATTAGCCAGAAATTCACCGAGTATCTTCGGCGCGCCGAGGAGATCCGAGCCGTTCTTGATGACGAAGGGCCCAGCCCGGCGTCCGAACGGGAGGATTCGGAGCAGGCGAAGCTGAGGGCAGGACTAAACTCGCTGATCGTTCGGGAGGAAGCCAATGTGAAGTGGAACGACGTCGCTGGGTTGGAGAGCGCGAAGCAAGCCTTGCAGGAGGCGGTGAAGTTCCCGCAAATTTCCACTGGTAAAAGACGACCCTGCAGGGCATTTTTGTTGTATGGACCAACCGGAACTGGGAAATCATATTTGGCGAGGGCTGTTGCAACTGAAGGCCAATCAACATTTTTCAGTGTCTCTCCAGCAGATCTGGTTTCTAAGTGGATGGGTGAAAGCGAAAAGCTAGTTTCAAACCTTTTCCAGATGGCTCGAGAAAGTGCTCCTTCCATCATATTTGTTGATGAAATAGATTCTTTATGCGGTCAGCGAGGAGAGGGCAACGAAAGCGAAGCTTCAAGACGAAGCAAAACTGAACTTTTAGTGCAGATGCAGGTTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCGACGAATACACCATATGCTCTTGATGAGGTACATTTGGGAGATACTCCTCATGGCTTGAGTGAAAGTGACTTTGAAGATTTGGCTCGTAGGACAGAGGGGTTTTCAAGTTCAGATATATCTGTCTGTGTCAAGGATGTTTCATATGAACCTGTTCGTAAAACTCAAGATGCCATGTTTTTCCTTAAAAATCTCGAGGGTATGTGGATCCCTTGTGGACCAAATCAACAGAATGCAGTGCAAATCTCAATGCAGGACCTTGCAGCAGAAGGACTCGCTTCTATGATCCTTCCACCACCTATAACGAGAACAGATTTTGACAAGGTTCTGGCTAGACAAAAGGCTACAGTATGCAAGGCTGACGTGGAGGTTCATGAGAGATTCACTAAGGAGTTTGGAGAAAAGGGTATGCTAACTGGGTTTGAGAATGAGATTCATTGCCTAATGATGGAAATGATTGGCTTCCATGTGAGCCAGTTATTGTTCCGACACACAGAATCTTCGTCGTGTGGTGTTGCCTTGCCTCCGCCACTACCCTCCTTCATCCAAACGCGTCCTTTTGACTCTCTAAACCTCTCAGATCATCTCTGCTTTTCTGCCTTTTTCCCGTCGCTTACGATCAGATCCTTATTAGTGTTCTCAATCGAGCGATAA 1398 0.4657 MYSNFKEQAIEYVKRAVQEDNAGNYAKAFPLYMNALEYFKVHLKYEKNPKIREAISQKFTEYLRRAEEIRAVLDDEGPSPASEREDSEQAKLRAGLNSLIVREEANVKWNDVAGLESAKQALQEAVKFPQISTGKRRPCRAFLLYGPTGTGKSYLARAVATEGQSTFFSVSPADLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRSKTELLVQMQVVGNNDQKVLVLAATNTPYALDEVHLGDTPHGLSESDFEDLARRTEGFSSSDISVCVKDVSYEPVRKTQDAMFFLKNLEGMWIPCGPNQQNAVQISMQDLAAEGLASMILPPPITRTDFDKVLARQKATVCKADVEVHERFTKEFGEKGMLTGFENEIHCLMMEMIGFHVSQLLFRHTESSSCGVALPPPLPSFIQTRPFDSLNLSDHLCFSAFFPSLTIRSLLVFSIER 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0936 465 Pfam ATPase family associated with various cellular activities (AAA) 143 258 IPR003959 GO:0005524|GO:0016887
Dere08g0936 465 Pfam Vps4 C terminal oligomerisation domain 317 381 IPR015415 -
Dere08g0936 465 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Dere08g0936 465 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Dere08g0936 465 Gene3D - 6 75 - -
Dere08g0936 465 SMART smart 2 79 IPR007330 -
Dere08g0936 465 SMART AAA_5 138 272 IPR003593 GO:0016887
Dere08g0936 465 Gene3D - 258 360 - -
Dere08g0936 465 PANTHER AAA DOMAIN-CONTAINING 259 382 - -
Dere08g0936 465 SUPERFAMILY MIT domain 2 80 IPR036181 -
Dere08g0936 465 CDD MIT_VPS4 4 77 IPR045253 -
Dere08g0936 465 FunFam vacuolar protein sorting-associated protein 4A 254 364 - -
Dere08g0936 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 333 IPR027417 -
Dere08g0936 465 Gene3D - 106 257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0936 Dere-ChrDere08 13213690 13219647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0936 137 313 Calmodulin-binding Proteins AT3G56690 31.373 6.17e-23 100