Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0932 ATGAAGATGGGTTTCAGGGAATATTGCAACGTCGAAGACAATAATATGTACTTTCATGTCCCTACTTTCATTGAATGGCTCAAGCCATCTCCGCCTCCTTCTCCTCCTCCTTCGTCTTCTTCTGTGACTCATCAACATGAGACTATCGAGTTTTTGCCTATTTTAAGTGGAAAGCCCTCAAAAGATGAAGACTTTAATATTGGAGTGATTAAAGAAGAGAAGGTCGAGCAAGATCAGACTGTGGCTTTGCACATTGGATTACCAAATACACAAGGATTTGAGGCTGAGAAGTATATGAAAGCTTTTGATGTGAACGAAGAAGAAGTGGTGAATAGAAACTTCCATGGGTGCTCTAATAATTTTCACACAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTGCTTGCTCCATATGCAACAAGACCTTCAATAGGTATAATAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATACAGGAAAGGACCAGAGTCACTAAAAGGAACCCAAACAGCAGCAATGCTGAGGCTACCATGTTACTGTTGTGCACAAGGTTGCAAGAACAATATCAACCACCCAAGAGCCAAGCCACTCAAGGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGCTCTAAGCCTTTTATGTGCAGAAAGTGTGGCAAAACCTTCGCAGTTAAAGGAGACTGGAGGACTCACGAGAAGAACTGTGGCAAGCTGTGGTATTGCACTTGCGGCTCAGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATCAGATCTTTTGGAAAAGGTCACAACCCTCATCCTTCTCTTGAAGGCTTTGAGGATGATCGCCAATCCTTCACTACTGGGTCGCAAGATGAAGTTGGTAGCTCTCACATCAATATCTAA 927 0.4358 MKMGFREYCNVEDNNMYFHVPTFIEWLKPSPPPSPPPSSSSVTHQHETIEFLPILSGKPSKDEDFNIGVIKEEKVEQDQTVALHIGLPNTQGFEAEKYMKAFDVNEEEVVNRNFHGCSNNFHTERRFWIPTPAQILVGPMQFACSICNKTFNRYNNMQMHMWGHGSEYRKGPESLKGTQTAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEGFEDDRQSFTTGSQDEVGSSHINI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0932 308 Gene3D Classic Zinc Finger 141 164 - -
Dere08g0932 308 MobiDBLite consensus disorder prediction 288 308 - -
Dere08g0932 308 MobiDBLite consensus disorder prediction 274 308 - -
Dere08g0932 308 SUPERFAMILY beta-beta-alpha zinc fingers 212 246 IPR036236 -
Dere08g0932 308 PANTHER ZINC FINGER PROTEIN WIP2 28 291 IPR043584 GO:0003700|GO:0010468
Dere08g0932 308 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Dere08g0932 308 Gene3D Classic Zinc Finger 185 275 - -
Dere08g0932 308 SUPERFAMILY beta-beta-alpha zinc fingers 128 165 IPR036236 -
Dere08g0932 308 SMART c2h2final6 189 221 IPR013087 -
Dere08g0932 308 SMART c2h2final6 226 246 IPR013087 -
Dere08g0932 308 SMART c2h2final6 142 164 IPR013087 -
Dere08g0932 308 FunFam Zinc finger protein WIP2 195 277 - -
Dere08g0932 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 246 IPR013087 -
Dere08g0932 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Dere08g0932 308 Pfam Zinc finger, C2H2 type 142 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0932 Dere-ChrDere08 13145074 13147500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0932 12 295 C2H2 Transcription Factor Family AT1G08290 53.333 4.29e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g0932 zf-C2H2 0.0069 CL0361