Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0924 ATGTATCATAATCACCAAAATCACGCGAAGAACATCCATTCTTCTTCTTCCAGGATGTCAGTCCCTTCGGAGAGGCATATGTTCCTTCAAACTGGAAATGGGTCTGGAGATTCTGGGCTTGTACTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATTCCAGATTTATAGAAGCAGTCAATCAGTTAGGCGGAGCCGACAAGGCAACTCCAAAAACAGTAATGAAGTTCATGGGGATTCCAGGACTTACTTTATATCATCTTAAGAGCCATCTTCAGAAGTACAGACTGAGCAAGAATCTGCATGGACAAAGTAACAATGTGACACAGAAAACCACAACAAATGCAGGTGCAGTAAGCGGAGAAAGACTTTCTGAAGCACATGGAACTAACAGTCATATGAACAATCTAACCCTTGGGCCGCAGGCTAACAAAGATTTACGTATAAGCGAGGCGTTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAACAACTTGAGGTACAGAGACACTTGCAGCTCCGGATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAAAAAGCTCAGGAGACGCTTGGCAGACAGAATATGGGAATAGTAGGACTTGAAGCTGCCAAAGTTCAACTCTCAGAACTGGTGTCCAAAGTATCCTCCCAATGTCTGAGTTCTGCTTTTTCAGAGCTGAAGGAATTACATGGATTTTGCCCACCGATCAACACACAAACCAACCAACCCACTGACTGCTCAATGGACAGCAGCCTCACATCCTGCGAGGGATCTCAAAGGGAGCAAGAGATGCCAAATGGAGGGATGTGCTTAATGAGACCCTTTAATGGCCACACCTTCATGGAACCAAAGGAAGCCGCTGAAGTGAAAAAGAACAATTTTCTCGACACTTTGGGCAAGGATATTGCAGAAAGAAGTTCTAACAACTTGACTATGAGCATTGGAGTTGATGGAGGAACAAAGAATGGCAGTAGCATTTATCCTGAGAGAATAATCGTGGGGAGAGAGTCAGATCGTGAGTTCCAACACCGGAACACCATTAATAGAACAGAAGCAATGAAATCGGCAGTGGATGAAAAAGTTTCTGCAGATTATAGATTCCCATACTTTGCAGCACCAAGACTAGACCTTAATACCCATCAAGAAAACGATGGTGCAGCGAGTTGCGAACAACTGGACTTGAATGGATTTAGTTGGAACTGA 1230 0.4439 MYHNHQNHAKNIHSSSSRMSVPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHSRFIEAVNQLGGADKATPKTVMKFMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTQKTTTNAGAVSGERLSEAHGTNSHMNNLTLGPQANKDLRISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNMGIVGLEAAKVQLSELVSKVSSQCLSSAFSELKELHGFCPPINTQTNQPTDCSMDSSLTSCEGSQREQEMPNGGMCLMRPFNGHTFMEPKEAAEVKKNNFLDTLGKDIAERSSNNLTMSIGVDGGTKNGSSIYPERIIVGRESDREFQHRNTINRTEAMKSAVDEKVSADYRFPYFAAPRLDLNTHQENDGAASCEQLDLNGFSWN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0924 409 Pfam MYB-CC type transfactor, LHEQLE motif 152 198 IPR025756 -
Dere08g0924 409 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Dere08g0924 409 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Dere08g0924 409 MobiDBLite consensus disorder prediction 1 22 - -
Dere08g0924 409 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Dere08g0924 409 MobiDBLite consensus disorder prediction 7 22 - -
Dere08g0924 409 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 356 IPR044848 GO:0003700
Dere08g0924 409 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Dere08g0924 409 Coils Coil 154 174 - -
Dere08g0924 409 Gene3D - 46 104 - -
Dere08g0924 409 FunFam Myb family transcription factor 46 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0924 Dere-ChrDere08 13057155 13059236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0924 79 409 G2-like Transcription Factor Family AT3G04030 47.293 1.03e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere08g0924 Myb_DNA-binding 6.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0924 08 13057155 13059236 Dere07g0659 07 9708541 9711294 CCT