Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0916 ATGGGAGAGACGGAGAAGGTGGTGCCGGAGGCGGAGGAGCTACCCAGGGCTATCGTGCGCCGGGTGGTGAAGGATGTGCTCTCGCGGTGCTCCGTTGACGGAGACATTTCCGTTCATAAAGATGCACTTCTCGCTATCTCGGAAAGCGCGCGCATCTTTATCCACTACCTTTCCGCTACGGCAAATGACATATGCAAGGAATCAAAGAGGCAGATAATAAACGCCGATGATGTATTCAAAGCTCTTATAGAAACCGAGTATTCCGAGTTTGTCCAGCCTCTGAAAGCTTCTCTCGAGGAGTTTAGGAAGAAGAACGCTGAAAAGAAAGCCGGTGCATCGAAGGAAAAGGACACGAAAAAGAAAAGGAAGTTGGAAGGTGACTCATCTGATAAAGGCGAGGGTGGTGACCAGAAATGA 417 0.4988 MGETEKVVPEAEELPRAIVRRVVKDVLSRCSVDGDISVHKDALLAISESARIFIHYLSATANDICKESKRQIINADDVFKALIETEYSEFVQPLKASLEEFRKKNAEKKAGASKEKDTKKKRKLEGDSSDKGEGGDQK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0916 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 82 IPR003958 -
Dere08g0916 138 SUPERFAMILY Histone-fold 14 120 IPR009072 GO:0046982
Dere08g0916 138 FunFam DNA polymerase epsilon subunit 3 6 138 - -
Dere08g0916 138 ProSiteProfiles OmpA-like domain profile. 1 30 IPR006665 -
Dere08g0916 138 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 10 136 - -
Dere08g0916 138 MobiDBLite consensus disorder prediction 105 138 - -
Dere08g0916 138 Gene3D Histone, subunit A 5 138 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0916 14 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 31.731 2.40e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere08g0916 CBFD_NFYB_HMF 1.6e-09 CL0012