Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0915 ATGCCACGAGGAAAGGGAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATTATGATGAAGAAAATGATCCTGAGGAAACAATGGAAGAAGAAATTGAATATGAGGAAGTAGAAGAAGAAGAGGAAGTAGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAAGAGGAAGAGGTTGAAGAAGTGGAAGAAGATGATGCTGATCATGTCAATGAGACTGATGCCATGCGAAACATTAGTAGTGATGAGGCAAAGGTGGAAGATGATGATGAGAAGAAAAAGCATGCTGAACTTCTTTCGCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAACTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTATAGAGGTTAGAGTTATGAAAGGAAAAGATTCTGCTGAAAATAAGGGCTTTGGTTTTGTGACTTTCAGAAGTGTGGAATTGGCTTCTAAAGCAATTGATGAGCTGAATAATACAGAATTTAAGGGTAAAAAGATAAAATGTTCAACATCTCAAGCAAAACACCGTCTTTTTATTGGTAATGTTCCTAGAACCTGGGAAGAAGAGGATCTGAGGAAGGTTGTAACTGAGGTTGGGCCTGGAGTTACAACTGTAGAACTAGTCAAGGATATGAAGAACACAAACAACAATCGCGGCTTTGCTTTTATCGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAATCCAAAATTCAAGCTAGGTGACAATGCTCCGACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCCGCATCTCAGGTGAAGGCAGTATATGTGAAGAATTTACCTAAGGATGTAACTCAAGAGCAATTAAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTACCACCAGCAAAGTCTGGGCAAGAAAAGAATAGAATTGGCTTTGTACATTTTGTGGAGAGGTCAAGTGCTATGAAAGCACTCAAAAACACTGAAAGATATGAATTGAATGGTCAAGTTTTGGAGTGCTCTCTGGCAAAACCGCAGGCTGACCAGAAGTCTGGAGGATCAAATACACAGAAGTCAGGATTGCTCCCAAGCTACCCACCCCATGTTGGTTACAATTTAGTTGGGGGTGCTTATGGTGGGCTAGGTGCAGGATATGGTGGTGCAGGATATGCACAGCCCATGATATATGGAAGGGGTCCAACTCCAACTGGAATGGCCATGATGCCCATGCTTTTGCCTGACGGTCGAATTGGATATGTCCTGCAACAACCAGGAGTGCAGCCACAAACCCCACCTTCGCATCAGAGAGGTGGCAGGAATGGAGGGAGTGGCAGCAGGAACGTTGGCAGTTCAAGCAAGGGGAGGTACAACAATGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1482 0.4352 MPRGKGNSSSVAKPSEPEKPTESDEKVDYDEENDPEETMEEEIEYEEVEEEEEVEEIEEEVEEEEEEEEVEEVEEDDADHVNETDAMRNISSDEAKVEDDDEKKKHAELLSLPPHGSEVYIGGIPHDASTEDLKAFCESIGEVIEVRVMKGKDSAENKGFGFVTFRSVELASKAIDELNNTEFKGKKIKCSTSQAKHRLFIGNVPRTWEEEDLRKVVTEVGPGVTTVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKDVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFVERSSAMKALKNTERYELNGQVLECSLAKPQADQKSGGSNTQKSGLLPSYPPHVGYNLVGGAYGGLGAGYGGAGYAQPMIYGRGPTPTGMAMMPMLLPDGRIGYVLQQPGVQPQTPPSHQRGGRNGGSGSRNVGSSSKGRYNNDSGQGRRYRPY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0915 493 CDD RRM_SF 119 191 - -
Dere08g0915 493 MobiDBLite consensus disorder prediction 1 101 - -
Dere08g0915 493 SUPERFAMILY RNA-binding domain, RBD 198 281 IPR035979 GO:0003676
Dere08g0915 493 SUPERFAMILY RNA-binding domain, RBD 114 372 IPR035979 GO:0003676
Dere08g0915 493 Coils Coil 38 83 - -
Dere08g0915 493 MobiDBLite consensus disorder prediction 447 483 - -
Dere08g0915 493 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 280 389 - -
Dere08g0915 493 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 480 - -
Dere08g0915 493 MobiDBLite consensus disorder prediction 446 493 - -
Dere08g0915 493 Gene3D - 198 278 IPR012677 -
Dere08g0915 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 279 IPR000504 GO:0003723
Dere08g0915 493 SMART rrm1_1 118 191 IPR000504 GO:0003723
Dere08g0915 493 SMART rrm1_1 198 275 IPR000504 GO:0003723
Dere08g0915 493 SMART rrm1_1 292 365 IPR000504 GO:0003723
Dere08g0915 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 189 IPR000504 GO:0003723
Dere08g0915 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Dere08g0915 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 262 IPR000504 GO:0003723
Dere08g0915 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Dere08g0915 493 FunFam RNA recognition motif-containing protein 21 197 - -
Dere08g0915 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Dere08g0915 493 SMART rrm2_1 292 365 IPR003954 GO:0003676
Dere08g0915 493 SMART rrm2_1 118 191 IPR003954 GO:0003676
Dere08g0915 493 MobiDBLite consensus disorder prediction 27 80 - -
Dere08g0915 493 Gene3D - 4 197 IPR012677 -
Dere08g0915 493 Gene3D - 281 415 IPR012677 -
Dere08g0915 493 MobiDBLite consensus disorder prediction 81 101 - -
Dere08g0915 493 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 198 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0915 Dere-ChrDere08 12995828 12999187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0915 119 452 Eukaryotic Initiation Factors Gene Family AT4G34110 23.822 9.10e-13 68.6