Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0908 ATGGAAGATCTCCCCCCTGGGTATCGCTTCTACCCTACTGAAGAAGAGCTAGTAACTTTCTACCTGCATAACAAGCTCGAAGGTCGAAGAAACCACATAAACAGAGTCATCCCTGTCATTGACATTTATGACGTTGAGCCCTGGCAGCTTCCACAACTTGCAGGAGAATTATGTCGTGGAGACACAGAGCAATGGTTCTTCTTCTCGCCGAGACAAGAGAGAGAAGCCAGAGGAGGCAGACCCAACAGAACCACCGCTTGTGGGTATTGGAAATCCACGGGTTCTCCAGGCTACGTCTACTCTTCTGATAACAGAGTCATTGGGGTGAAGAAAACCATGGTTTTTTACAAAGGCAAAGCCCCTTCTGGAAGGAAAACCAAGTGGAAAATGAACGAATACAGAGCAATTGAAGTCTCTCACCAATCCAGCATCGCCACTCCCAAGTTGAGGCACGAATTCAGCTTGTGCCGAGTATATGTGACATCGGGAAGCTGTCGAGCATTTGATCGACGCCCTTTAGTTGATGGTGCTACTGCAATTCCTCGTCAGAATTCAGGGGTAGATGGATCAAGCTCCTCTGGAAGTTCCCACTCAGGAGGACACCATGGTGCTGCTCTCCCACATGTTGGAGGATCAACTAGTTCAAACTGGACTGTAAATAATGACGTAGAAGAGCCTGTATGGGAATGGGATCAAGTTAACTGGGTTCAGATTTCTTCACTTGCTGGTGCTGATTCCAAGTCCACTGCCAAAGGGAAAGCAATTGCAGAGGCTGCTCCTCCTTCAGCAGCTGTAGTTTCCACAAAAGCTACCCCTCTCCCAATGGCTAGATGGAAAAAGGGGCTTGCCATCGTAGACTTCGTCCTCAGACTCGGCGCCATCGGAGCCACCTTCGGCGCCGCCGTCCTTATGGGAACCAATGAACAGATACTTCCATTCTTCACTCAGTTCGTTCAGTTCCACGCTCAGTGGAACGAATTCCCCATGTTCCAGTTCCTTGTGGTAGCAAGTGGAGCAGCTGCTGGGTACCTCGTACTCTCCTTGCCATTCTCACTCGTGTGCATTGTTCGTCCCCTAGCAGTTGCCCCGAGGCTTCTTCTTATGATCTTGGATACAGTGATGATGGCCGTAGTCACAGCTGGTGCTTCATCTGCAGCTGCTACAACATACTTAGCTCATAATGGAAGCCAGGACGCAAATTGGATGGCTGTATGTTCCCAGTTCACTGACTTCTGCCAGGTTGCCAGCGAGGCTGTGGTGCTTTCCTTCATTGCGTCCATTTTCTTTGTTTGCTTGATCCTTGTGTCCTCTTTGGCTCTCAGAAGGAATTGA 1332 0.494 MEDLPPGYRFYPTEEELVTFYLHNKLEGRRNHINRVIPVIDIYDVEPWQLPQLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTACGYWKSTGSPGYVYSSDNRVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIEVSHQSSIATPKLRHEFSLCRVYVTSGSCRAFDRRPLVDGATAIPRQNSGVDGSSSSGSSHSGGHHGAALPHVGGSTSSNWTVNNDVEEPVWEWDQVNWVQISSLAGADSKSTAKGKAIAEAAPPSAAVVSTKATPLPMARWKKGLAIVDFVLRLGAIGATFGAAVLMGTNEQILPFFTQFVQFHAQWNEFPMFQFLVVASGAAAGYLVLSLPFSLVCIVRPLAVAPRLLLMILDTVMMAVVTAGASSAAATTYLAHNGSQDANWMAVCSQFTDFCQVASEAVVLSFIASIFFVCLILVSSLALRRN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0908 443 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 193 - -
Dere08g0908 443 MobiDBLite consensus disorder prediction 179 218 - -
Dere08g0908 443 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Dere08g0908 443 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
Dere08g0908 443 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Dere08g0908 443 Pfam Casparian strip membrane protein domain 280 428 IPR006702 -
Dere08g0908 443 MobiDBLite consensus disorder prediction 183 199 - -
Dere08g0908 443 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Dere08g0908 443 NCBIfam plant integral membrane protein TIGR01569 287 438 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0908 Dere-ChrDere08 12936897 12940141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0908 2 235 NAC Transcription Factor Family AT3G44350 58.264 5.21e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0908 DUF588 8.7e-41 CL0396