Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0899 ATGATGGAAGGGGTTTCGAGGGAAGCGCATATGTCAATCGCTGCTTCGTCCATGTTTCCTGGGTTCAGGTTCTGTCCTACTGACGAAGAGTTGATTTCCTATTATCTCAGGCAAAAGTTGGACGGTCATGAAGAGAGCGTTCAAGTGATTTCCGAGATTGAGCTTTGCAGATATGAGCCTTGGGATTTACCAGCTAAATCATTCATTCAGTCAGATAAAGAGTGGTTCTTCTTCTCCCCTCGGGGAAGAAAGTACCCAAATGGTTCACAAAGTAAGAGGGCAACTGAACGTGGCTATTGGAAGGCCACTGGAAAAGAGCGCAATGTAAAGTCAGGTTCTAATGTTATAGGCACCAAGCGAACTTTGGTATTCCATATGGGTCGTGCACCTAAAGGGGAAAGGACTGAATGGATTATGCATGAGTACTGCATCAACAACAAATCTCAGGATTCTTTGGTTGTTTGTCGGCTAAAGAGGAACGCAGAGTTTCGTCTGCACGATGCTTCAAATAGAGCATCTTCAAGTCAAGTGCGGGAAGTGAATTCTCACGATGAAAGTAACTGTGCTATCTCCGAAGCTGAGATTGATCAAAGGGGTGTGTCCGAACAAGATAAAGGGGTTGGATGTAGTTCAAAGCGCAGCAGTTGCAGTTATGGTTCTCCTTCAGTGGAGCTAATTGATTCTGCCTCGGAGTCCAATCAGAGACCAGCTAATTATGATGCTGCTTTGACAGAAACTTCCAGTCACCAAAAGGAGGTGGATGAAGAGGATTGTTATGCTGAGATACTGAAGGATGATATCATCAAGTTAGATGAATCCTCACTAACGTCGCAAGAGGCTCACACAAGATTGCAGGATCCTCCTTGGACACACACTTTCCAAGGCACAGCACAACGAAGAATTAGATTAGAGGTAGAGAAACCAAGGCATTATTCTCATGCTGCAGAACTTCGTTTTCCGCGCTCAAAGCACTCATCCAAGAGTACCCTCTTTGGTACGTTGACAAATCGTGTAATGTTATGTGTTCTCTTCGTTCTAACTTTGATAGCTCTATGTTTGTCCTTATTGGGCTCGGGTAGTCTCAAACAAGTGAAAAGCTGTGAGAGATTTGGTTGA 1116 0.4435 MMEGVSREAHMSIAASSMFPGFRFCPTDEELISYYLRQKLDGHEESVQVISEIELCRYEPWDLPAKSFIQSDKEWFFFSPRGRKYPNGSQSKRATERGYWKATGKERNVKSGSNVIGTKRTLVFHMGRAPKGERTEWIMHEYCINNKSQDSLVVCRLKRNAEFRLHDASNRASSSQVREVNSHDESNCAISEAEIDQRGVSEQDKGVGCSSKRSSCSYGSPSVELIDSASESNQRPANYDAALTETSSHQKEVDEEDCYAEILKDDIIKLDESSLTSQEAHTRLQDPPWTHTFQGTAQRRIRLEVEKPRHYSHAAELRFPRSKHSSKSTLFGTLTNRVMLCVLFVLTLIALCLSLLGSGSLKQVKSCERFG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0899 371 MobiDBLite consensus disorder prediction 207 246 - -
Dere08g0899 371 Gene3D NAC domain 27 165 IPR036093 GO:0003677|GO:0006355
Dere08g0899 371 FunFam NAC domain-containing protein 100-like 27 164 - -
Dere08g0899 371 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Dere08g0899 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 240 - -
Dere08g0899 371 MobiDBLite consensus disorder prediction 195 250 - -
Dere08g0899 371 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Dere08g0899 371 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0899 Dere-ChrDere08 12875317 12877334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0899 5 280 NAC Transcription Factor Family AT2G27300 52.708 2.08e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere08g0899 NAM 1.3e-34 No_clan