Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0885 ATGGAAGGTAGTCAGATGAATCTCTGCATTTTCCTCATTTGCTGCCTAATGACAGTGAGTTATGGTGCTACGGATCCAAATGATCTCAAAGTTCTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTCTCGAATGGCCAGACAAGGGAGATGACCCATGTGGCTCTCCCCCGTGGCCTTATGTGTTCTGTTCTGGTGATAGAGTCACGCAGATTCAGGCCAAGTCTTTGGGTCTCAAAGGACAATTGCCTCTAAACTTCAACCAGCTCTCAGAACTCTTCAATCTGGGTCTTCAACACAACAAGCTCAATGGAATGTTGCCTACGTTTAGTGGATTATCCAAACTAGAATTCGCTTTCTTGGATTACAATGAATTTGATGCAATACCATCTGATTTCTTCAATGGACTTACCAGCCTCCGAGTCCTGTCTCTGGAAGAAAATCCATTAAATGCGAGTACAGGGTGGTCTTTTCCTGTGGATTTAGAAAAGTCAGCACAACTAACGAATCTTTCTCTTGTACATTGTAATTTGGCTGGTTCATTGCCGGATTTTCTAGGCACATTACCATCTCTCACAAACCTGAGACTTTCAGACAACAAACTCTCTGGTACCATTCCAGCTAGCTTTGGTCAGTCTTCGATGCAGGTTTTGTGGTTGAACAATCAAGATGGTGGAGGAATGACGGGTCCCATTGATGTTATTGCTTCGATGACTTTCCTAACACAGCTTTGGCTACATGGAAACCAATTCACAGGGACAATTCCAGAGAACATTGGGAATCTAATTTCTTTGGTGGAGCTCAACCTCAATAGTAATCAACTCGTTGGCTTTATTCCAGAATCCCTAGCCAATATGCAGCTTAAGGTATTAGTGCTAAATAATAACAAACTAATGGGTCCAATTCCAAAATTTAAGGCTGCTAATGTTTCTTGTGATTTTAATTCCTTCTGTCAAACTGAGCCCGGAGTTGAATGTGCCCCTCAAGTTACTGCACTATTGGATTTTCTGGGTCATCTAAATTACCCATCTATTCTTACTTCTGGATGGTCAGGTAATGAACCATGCGAAGGGCCGTGGTTAGGATTGAGCTGCAATCCCAAGTCGGAGGTATCTGTAATCAATTTACCAAGACATGGGCTTAACGGAACTCTGAGTCCATCACTTGCTAAGTTAGACTCACTCCTCGAAATTAGGCTTGCTGGAAATAATATAACTGGTACGGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGGTTGCTGGATTTAGGTGATAACAATCTTGAGCCTCCATTTCCAAAATTTCATGATGGTGTGAAGGTTATTACTGAGGGAAACACTCTTTCTGCTAATCAAACAGGAAGGAATCCCCTGCCTACAAGCAGCCCACCACCTTCGAGTTCACAATCTTCACCGCACAACCCTTCATCACCATCCTCCCATAAGCCACCTTCACCAAGTAAGAGTTCAAGCTCAAACCCATCCAATTCCCAATTAGATGAATCAAAAAGAATCAAAACAATAGCAATAGTGGCTGGAGTTGCAATTTTTGCACTTGTTGCTCCTTTGGCTTTTTTTCTATGCATATGTTGCTCGAAGAAGAAGAACGCCTCCTTATCCGCTCCTAGTTCCGTAGTGGTTCACCCAAAAGACCCATCTGATCCAGAAAATACTGTTAAAATTGCAGTTTCAAATAACATGACTGGAACCTTACCAACTGGGACAAGTCCAATGAATAACCTTAGCGATGCAACTGTAAATACTCATGTAATTGAGGCTGGAAACCTGGTTATCTCTGTTCAAGTTCTGCGCAAGGTTACCAAGAATTTTGCTTCAGAAAATGAGCTGGGTCGGGGTGGGTTTGGAACTGTTTATAAGGGTGAACTTGAAGACAAAACAAAAATAGCAGTGAAGAGAATGGAGGGTGGTGCTCTTAGCAGCAAAGCGCTAGATGAGTTTGAAGCTGAAATAGCCGTACTATCCAAGGTCCGTCACCGGCATTTGGTGTCCCTGTTAGGATATTCCATTGAGGGCAACGAAAGATGTTTGGTTTATGAATATATGCCTCTGGGTGCTCTAAGCAAGCATCTCTTTCATTGGAAAAAGCTGAAATTAGAGCCTTTGTCTTGGTCACAGAGGCTGGCAATAGCGCTAGATGTTGCTAGAGGGATGGAATATTTACATGGTCTCGCCCACCAGACCTTCATCCACCGAGACCTCAAGTCTTCGAATATCTTACTGAATGATAATTTTCGGGCTAAAGTTTCGGACTTTGGTCTAGTGAAACTTGCCCCAGATGGTGAGAAGTCAGTTACAACTAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGATGTGTTCAGCTACGGCGTGGTGTTGATGGAACTTCTGACTGGACTAATGGCACTTGATGAAAGTCGGCCAGAGGAAAGTCGGTACTTGGTGGAATGGTTTTGGCGTACTAAATCGAGCAAAGAAAAGCTTATGGCTGCCATTGATCCTGCTCTTGAGGCAAGTGAAGAGACTTTTGAGAGTATTAGCATTATAGCAGACCTTGCTGGATATTGCACTGCGAGGGAACCCAACCATCGACCTGATATAGGTCATGCAGTGAATTTACTGGCAACATTACTAGAGAAATGGAGACCCGTTGATGATGAATTTGATGATGTCAGTGGCATTGACTTCAGCCAACCCCTTCCTCAGATGTTGAAGATTTGGAAGGATTCAGAATGTAAAGAGGTTAGCTATGCTAGTCTTCAAGACAGCAAAGGTAGTATACCAGCTAGGCCTACTGGGTTTGCTGAGTCCTTTACTTGCGCAGATGCTCGATGA 2877 0.431 MEGSQMNLCIFLICCLMTVSYGATDPNDLKVLNDFRKGLENPELLEWPDKGDDPCGSPPWPYVFCSGDRVTQIQAKSLGLKGQLPLNFNQLSELFNLGLQHNKLNGMLPTFSGLSKLEFAFLDYNEFDAIPSDFFNGLTSLRVLSLEENPLNASTGWSFPVDLEKSAQLTNLSLVHCNLAGSLPDFLGTLPSLTNLRLSDNKLSGTIPASFGQSSMQVLWLNNQDGGGMTGPIDVIASMTFLTQLWLHGNQFTGTIPENIGNLISLVELNLNSNQLVGFIPESLANMQLKVLVLNNNKLMGPIPKFKAANVSCDFNSFCQTEPGVECAPQVTALLDFLGHLNYPSILTSGWSGNEPCEGPWLGLSCNPKSEVSVINLPRHGLNGTLSPSLAKLDSLLEIRLAGNNITGTVPSNFTELKSLRLLDLGDNNLEPPFPKFHDGVKVITEGNTLSANQTGRNPLPTSSPPPSSSQSSPHNPSSPSSHKPPSPSKSSSSNPSNSQLDESKRIKTIAIVAGVAIFALVAPLAFFLCICCSKKKNASLSAPSSVVVHPKDPSDPENTVKIAVSNNMTGTLPTGTSPMNNLSDATVNTHVIEAGNLVISVQVLRKVTKNFASENELGRGGFGTVYKGELEDKTKIAVKRMEGGALSSKALDEFEAEIAVLSKVRHRHLVSLLGYSIEGNERCLVYEYMPLGALSKHLFHWKKLKLEPLSWSQRLAIALDVARGMEYLHGLAHQTFIHRDLKSSNILLNDNFRAKVSDFGLVKLAPDGEKSVTTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLVEWFWRTKSSKEKLMAAIDPALEASEETFESISIIADLAGYCTAREPNHRPDIGHAVNLLATLLEKWRPVDDEFDDVSGIDFSQPLPQMLKIWKDSECKEVSYASLQDSKGSIPARPTGFAESFTCADAR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0885 958 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Dere08g0885 958 SMART serkin_6 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0885 958 SUPERFAMILY L domain-like 328 437 - -
Dere08g0885 958 MobiDBLite consensus disorder prediction 485 502 - -
Dere08g0885 958 SUPERFAMILY Protein kinase-like (PK-like) 594 888 IPR011009 -
Dere08g0885 958 Coils Coil 956 958 - -
Dere08g0885 958 FunFam receptor protein kinase TMK1 690 907 - -
Dere08g0885 958 Gene3D Transferase(Phosphotransferase) domain 1 690 906 - -
Dere08g0885 958 FunFam Receptor-like kinase TMK4 26 324 - -
Dere08g0885 958 Gene3D Phosphorylase Kinase; domain 1 576 689 - -
Dere08g0885 958 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Dere08g0885 958 PANTHER OSJNBA0070M12.3 PROTEIN 8 958 - -
Dere08g0885 958 SMART LRR_typ_2 91 113 IPR003591 -
Dere08g0885 958 SMART LRR_typ_2 114 137 IPR003591 -
Dere08g0885 958 SMART LRR_typ_2 239 262 IPR003591 -
Dere08g0885 958 SMART LRR_typ_2 190 214 IPR003591 -
Dere08g0885 958 SMART LRR_typ_2 263 286 IPR003591 -
Dere08g0885 958 SMART LRR_typ_2 138 161 IPR003591 -
Dere08g0885 958 MobiDBLite consensus disorder prediction 460 484 - -
Dere08g0885 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Dere08g0885 958 MobiDBLite consensus disorder prediction 451 502 - -
Dere08g0885 958 Gene3D Ribonuclease Inhibitor 26 325 IPR032675 -
Dere08g0885 958 CDD STKc_IRAK 618 882 - -
Dere08g0885 958 ProSiteProfiles Protein kinase domain profile. 612 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0885 958 Gene3D Ribonuclease Inhibitor 329 454 IPR032675 -
Dere08g0885 958 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Dere08g0885 958 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Dere08g0885 958 Pfam Protein tyrosine and serine/threonine kinase 615 885 IPR001245 GO:0004672|GO:0006468
Dere08g0885 958 SUPERFAMILY L domain-like 24 306 - -
Dere08g0885 958 FunFam receptor protein kinase TMK1 575 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0885 Dere-ChrDere08 12761705 12764749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0885 58 904 Receptor kinase-like Gene Family AT1G55610 29.162 3.26e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Dere08g0885 PK_Tyr_Ser-Thr 3.1e-47 CL0016