Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0880 ATGGGGACGTACTTTCATGGAAGCAATTCAGAAATCCAATCCTCCGCTGCTGCTGATGGCTTCCACACGCTTTACCTTCTGAACCCCAGCACCACCACCACCTATGTACCCTACTCCGACGCTACCTCCCACCCCCACCCGACACCGAACATGCTCCTTCTTAATCCCAACTCTTCCCCGAACATGCTCAACCTCGCCAACGTCTCCCACGCGCCACCACCCTCCTCCTCCAACCATAACCCGGACGATCCCTCCCGACCCTCCTTCCTTGGACATGAAATCTCCGCCTTCCACGGCTTCATCGCCGGGGGAGCGGCACCTCCGCGTGTCCACTACAACCTCTGGGATTCGATGATTGATCATCAACCAACGTCGGCCGTGGCAACCGCTTCTTGCAGTTCTGGTGGGGCCCCCTCCGCCTCTGCCTCCGCCGCCGCAGACGTGTCGCCACAAATGAGTTTCCAGAGGCCTAGTCAGCAGGGTCTGTCGTTGAGCCTCTCTTCACAACAGACAGCTTATAGGTCCCTTTCCGGCGAGCTCGACGTTCCGGGACAACATCAAGTTGCTGCTATATCACCCTCGAATTGTGTTGATGTGCGGATTCTAGGTCCAAGTCATCATCATGCTTCGTCCAATGGAATTTCGAGTGTACAGAGTTTTGTTTTGGGGTCCAAGTATTTGAAAGCAGCTCAGGAAACTTTGGATGAAGTTGTTAATGTGGGTAAGGGAATCCACAAAGAGGAGGCTACGAAAGAGAAAATGAAGGCGAATAGAGAATCAACTTCTGGTGGGAATCGTGACGGTTCGAGTGGAGGTGTAGGAGGAGAAACTAGTGGGAATGGGAAGCAAGCAGGTGAACTCAGTACAGCTCAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGCTAGCATGCTTGATGAGGTGGAACAAAGGTACAGACAGTATCACCACCAAATGCAGATAGTGATATCATCATTTGAGCAGGCAGCGGGATATGGTGCGGCAAATACATACACATCACTTGCCCTAAAGACGATCTCAAAGCAATTTCGATGCCTCAAAGATGCAATAGCTTCACAAATAAAAGCAACGAGCAAGAGCCTGGGTGAGGAAGATTGCCTGGGAGCTAAGGTAGAAGGTTCGAGACTGAGGTATGTGGACCACCATCTCCGGCAGCAACGGGCGTTACAGCAGCTGGGAATGATGCAACACAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTCTTTGAGCATTTTCTTCACCCCTATCCCAAGGACTCCGATAAAGTTATGCTTGCAAAACAAACTGGACTTACTCGTAGCCAGGTGTCAAACTGGTTCATAAATGCTAGAGTTCGGCTATGGAAACCAATGGTGGAAGAAATGTACATGGAAGAAATGAAGGAGCAAGAGGGGAATAAGGAGGTGGGGTCAAGCACTAAGGATTCACAACCACAAGAATCAAGTAGGCTTAGACTTGATCATCAGATGAAAGGCTTCCAATCTAATCCAGGTCAAAGCTTCAACAGCAAAGCAACTACTCCAACCGACATCTCAAATTCTTCAATCTACCTTCAACCTCAGTCTGAAGCCTTCCATGCTGCCGCTGGGTCGTCGTCTCATCATCAAGACATGCAACTAAGAAGTCCCAAAAAGCCAAGAAGTTCCGAAATAATGCACAACTCTCCAAGCAGTATACTTTCAGTGGACATGGAAATGAAGCCCGGAGACAGAGACAGATCAGAAGGCAACACCAAATTTGGCATGGAAAGGCACCCTCTGGTAACTAGTGGCCATGGTGGGGGATATGGAGGGTTCTCCATGGAAGACATGGGAAGGTATAACGTGGCTGACCAATTGCCTCCAAGGTTCCATGGAAACGGTGTTTCTCTGACTCTTGGACTTCCTCACAGCACTGACAACCTTCCCCACCATGGATTTCTGTCGCACAATATGAATATGACAACTGATGGAACCGACTTTTGTGCAATCAACACTCCACCATCTCATTCGAGCACCAATTATGACAATATTGACATTCAGAATAGGAAGAGGTTTGCTGCTCAGTTATTGCCAGATTTTGTCGCCTGA 2124 0.4948 MGTYFHGSNSEIQSSAAADGFHTLYLLNPSTTTTYVPYSDATSHPHPTPNMLLLNPNSSPNMLNLANVSHAPPPSSSNHNPDDPSRPSFLGHEISAFHGFIAGGAAPPRVHYNLWDSMIDHQPTSAVATASCSSGGAPSASASAAADVSPQMSFQRPSQQGLSLSLSSQQTAYRSLSGELDVPGQHQVAAISPSNCVDVRILGPSHHHASSNGISSVQSFVLGSKYLKAAQETLDEVVNVGKGIHKEEATKEKMKANRESTSGGNRDGSSGGVGGETSGNGKQAGELSTAQRQELQMKKSKLASMLDEVEQRYRQYHHQMQIVISSFEQAAGYGAANTYTSLALKTISKQFRCLKDAIASQIKATSKSLGEEDCLGAKVEGSRLRYVDHHLRQQRALQQLGMMQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEGNKEVGSSTKDSQPQESSRLRLDHQMKGFQSNPGQSFNSKATTPTDISNSSIYLQPQSEAFHAAAGSSSHHQDMQLRSPKKPRSSEIMHNSPSSILSVDMEMKPGDRDRSEGNTKFGMERHPLVTSGHGGGYGGFSMEDMGRYNVADQLPPRFHGNGVSLTLGLPHSTDNLPHHGFLSHNMNMTTDGTDFCAINTPPSHSSTNYDNIDIQNRKRFAAQLLPDFVA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0880 707 MobiDBLite consensus disorder prediction 478 609 - -
Dere08g0880 707 Gene3D - 411 489 - -
Dere08g0880 707 ProSiteProfiles 'Homeobox' domain profile. 405 468 IPR001356 GO:0003677
Dere08g0880 707 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 144 491 - -
Dere08g0880 707 MobiDBLite consensus disorder prediction 248 298 - -
Dere08g0880 707 MobiDBLite consensus disorder prediction 128 166 - -
Dere08g0880 707 FunFam BEL1-like homeodomain protein 9 411 473 - -
Dere08g0880 707 MobiDBLite consensus disorder prediction 38 89 - -
Dere08g0880 707 CDD homeodomain 408 468 IPR001356 GO:0003677
Dere08g0880 707 MobiDBLite consensus disorder prediction 38 84 - -
Dere08g0880 707 SUPERFAMILY Homeodomain-like 409 475 IPR009057 -
Dere08g0880 707 Coils Coil 292 312 - -
Dere08g0880 707 Pfam Associated with HOX 221 359 IPR006563 -
Dere08g0880 707 Pfam Homeobox KN domain 425 464 IPR008422 GO:0003677|GO:0006355
Dere08g0880 707 MobiDBLite consensus disorder prediction 583 598 - -
Dere08g0880 707 MobiDBLite consensus disorder prediction 261 298 - -
Dere08g0880 707 MobiDBLite consensus disorder prediction 506 555 - -
Dere08g0880 707 SMART HOX_1 408 472 IPR001356 GO:0003677
Dere08g0880 707 SMART prehox3 215 360 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0880 Dere-ChrDere08 12677782 12680866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0880 1 707 Homeobox Transcription Factor Family AT2G35940 42.243 7.58e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere08g0880 POX 3.3e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0880 08 12677782 12680866 Dere07g0596 07 9063513 9066923 CCT
Dere08g0880 08 12677782 12680866 Dere08g0880 08 12677782 12680866 ECH