Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0879 ATGGCTGAAATTGAAATTCCTCAATATTTCATATGTCCTATATCCCTTGACATCATGAAGGACCCTGTGACGGCAAATACAGGCATAACATACGACAGAGAGAGCATCGAGCAGTGGTTGCTGACGGCGAAGGAAAGTAAATGCCCAGTCACCAAGCAGCCATTACCCAGAGACTCAGATTTGACCCCAAACCACACCCTACGCAGGCTCATCCAGGCATGGTCCTCAGAAAACGCACACAACGGCGTCGTTCGGATTCCTACCCCAAAACCCCCACTCTCCACCATCCATGTACACAAACTGATCACCGATCTTGAAGTTCCTCATTTGTATCCCATGACGTTGAGAGAGATGGATGCTCTGGCCACTGACTGCGAAAGGAACAGAAGGTGCATGGTGGAATCTGGAGTGCCCGAGGCTATGGTTTCCATAGTTTCTGAGAGCTTCAAGGAAGGTACAGCATGTTGCCTTGAAGAAGCTGTGAGGATCCTTCGCTTACTCTGGGGTGCATCATCCATGGCCCGCATGAACCCTCTGGTTTGCAAGAATTTAGACTTTATCAACTCGTTGACTTGGGTTTTGCAAACTCAAATAAACAACGTTAATATAGTAAACGAAGCAATGCCTGTTTTGAGATCGACGATCGAATCAGCAGATTCAACCCTTCTCGGAAATTTAAAGGTTGAATTTTTCAGAGCAATAACGGGGGTACTCAAGAACAGAGGAGTCTCAGTGCAGGCTATCAAATCTGCGTTGGACGTGCTGATAGAAACGTGCCCATTAGGCAGAAACCGAATGAAAATGGTAGAATCAGGTGCAGTGTATGAATTAATAGAGCTTGAGCTGGAAAAACCAGCGAAGAACATAACAGAGCCTGTGGTTAACCTTCTGGCGCATCTATGTTCGTGTGCCGATGGGAGAGAACAGTTCGTGCAACACGCAGGGGGCATCGCTGTGATGTCTAAGAGGATTCTGAGGGTTTCTAATGCAACGGACGAGCGAGCTGTTCATGTGTTATGGTTGATAGCTAGGTACTCGGTTTCAAATGACGTCGTTTCGGAGATGTTGAGGGTGGGAGCAGTGTCCAAGCTTTGCATGGTGATGCAAGCGGCTTGTGCTTCGTCTTTGAAAGACAAAGCAAGAAGCATCCTTAGGTTACACTCCAAGGTCTGGAACAATTCTCCTTGTATTCAAGTATATTTGCTAACCAGGCACCAAAGGTGA 1224 0.4698 MAEIEIPQYFICPISLDIMKDPVTANTGITYDRESIEQWLLTAKESKCPVTKQPLPRDSDLTPNHTLRRLIQAWSSENAHNGVVRIPTPKPPLSTIHVHKLITDLEVPHLYPMTLREMDALATDCERNRRCMVESGVPEAMVSIVSESFKEGTACCLEEAVRILRLLWGASSMARMNPLVCKNLDFINSLTWVLQTQINNVNIVNEAMPVLRSTIESADSTLLGNLKVEFFRAITGVLKNRGVSVQAIKSALDVLIETCPLGRNRMKMVESGAVYELIELELEKPAKNITEPVVNLLAHLCSCADGREQFVQHAGGIAVMSKRILRVSNATDERAVHVLWLIARYSVSNDVVSEMLRVGAVSKLCMVMQAACASSLKDKARSILRLHSKVWNNSPCIQVYLLTRHQR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0879 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Dere08g0879 407 SUPERFAMILY RING/U-box 4 79 - -
Dere08g0879 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Dere08g0879 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Dere08g0879 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Dere08g0879 407 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Dere08g0879 407 SUPERFAMILY ARM repeat 115 370 IPR016024 -
Dere08g0879 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Dere08g0879 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
Dere08g0879 407 Gene3D - 114 397 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0879 Dere-ChrDere08 12667567 12668790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0879 3 397 U-box Gene Family AT2G35930 41.103 1.01e-102 309