Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0878 ATGGATGAAATCCAAGTTCCTTTCCATTTTCTCTGCCCCATTTCGTTGCAACTTATGAGAGACCCTGTCACGGTATGCACTGGAATCACTTACGATAGAGAAAACATTGAAAAATGGCTCTTCTCGTGCAAGAGCAAGACCTGCCCTGTCACGAAGCAATCCATTTTAGACACGGATCTTACTCCAAACCACACGCTTCGACGTTTGATCCAAGCTTGGTGCACCCTTAACGCCTCGTTTGGGATCGAGCGAATTCCGACTCCGAAGCCACCCATCGACGAAACACAGATCGCCAAACTCATCTCCGAAGCACACAGGTCGCCACGTAACCATCTCGAATGCCTTAGAAGGCTTCGATCCATTGTCTTCGAAAGCGAAAGGAACAAACTCTGTTTGGCGTCTGCAGGGGCTATAGAATTCTTGGCTTCAACCTTGAAGTTTAGAAGTAGCGTTGACGACCACCACCACGATGATGATTGTAGAGCTGTGAGTAGTGAAGCGGCAATTGAGGTTCTGTTTCATCTAAATCCATCGGAAACTCAGATTAAAAATCTGATCAACAACGAGGGCATTCAATTCATCGAGTCCTTGATCCAAATCTTGAGGATTGGGAACTACCAATCTCGAGCTTATGCAACAGTACTATTGAAGTCGGCGTTTGGAGTAGCAGATCCATCCCAAATGATCAATGTCAGAACGGAGTTGTTCGTGGAACTAATGCGAGTGCTGCGAGATCGGGTTTCACAGCAAGCTTCAAAGGCAGCGTTGAAGCTAGTAGTAGAGCTGTGTTCATGGGGGAAGAACAGAATCAAAGCGGCGGAAGGCGGTGTTGTTTTGGTGCTGATAGAGATGCTTCTAGAAGCTTCCGAAAGAAGAGAGTGCGAGCTGATGCTTATAGCTTTAGATCAGCTGTGTGGGTGTGCAGAAGGGAGGGCAGAGCTGTTGAAGCACGGAGCAGGAGTGGCCATTGTGTCGAAGAAGATTCTGAGGGTGTCGCACGTGGCAAGCGATAGGGGGGTGAAGATATTGAGCTCAATTTGCAGGTATTCAGCGAACTGTAGGGTTCTTCAAGAGATGTTGCAGGTTGGTGCAGTGAGTAAGTTGTGTTTGGTGCTTCAGGTGGAGGCGAGTTTGAAGACGAAGGAGAGGGCCAAAGAGATACTGAAACTGCACTCTAGGGTTTGGAAGAATTCCCCATGTATTCCTGCTCCTTTGCCCCAATCCTATCCATCTAATTGA 1239 0.477 MDEIQVPFHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKSKTCPVTKQSILDTDLTPNHTLRRLIQAWCTLNASFGIERIPTPKPPIDETQIAKLISEAHRSPRNHLECLRRLRSIVFESERNKLCLASAGAIEFLASTLKFRSSVDDHHHDDDCRAVSSEAAIEVLFHLNPSETQIKNLINNEGIQFIESLIQILRIGNYQSRAYATVLLKSAFGVADPSQMINVRTELFVELMRVLRDRVSQQASKAALKLVVELCSWGKNRIKAAEGGVVLVLIEMLLEASERRECELMLIALDQLCGCAEGRAELLKHGAGVAIVSKKILRVSHVASDRGVKILSSICRYSANCRVLQEMLQVGAVSKLCLVLQVEASLKTKERAKEILKLHSRVWKNSPCIPAPLPQSYPSN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0878 412 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Dere08g0878 412 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
Dere08g0878 412 SUPERFAMILY RING/U-box 3 77 - -
Dere08g0878 412 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Dere08g0878 412 CDD RING-Ubox_PUB 7 60 IPR045210 -
Dere08g0878 412 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Dere08g0878 412 Gene3D - 94 397 IPR011989 -
Dere08g0878 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Dere08g0878 412 SUPERFAMILY ARM repeat 106 388 IPR016024 -
Dere08g0878 412 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0878 Dere-ChrDere08 12658208 12659446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0878 1 411 U-box Gene Family AT3G52450 52.968 3.44e-158 451