Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0868 ATGGACATGATGGCAACCGAACGTTTTGGTTATGTTCAGTGCAACTTCTGCAACACCAATCTAGCGGTAAGTGTTCCATGCAACAGTTTGCTTACCATTGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTACCAGTTCACATGGGAGCATCTCTCCAAACATTTCCTCCTCAAGACCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAATCAAGCAACAGAGAAATGGGATCATCTTCGAAATGCAGCAAATTAGCTGCACTTGAGTCCGTAGAGCATGAGCAACATAGGATTCCTCCCATTCGTCCCCCTGAGAAGAGACAACGCGTTCCTTCAGCTTATAACCGGTTCATCAAGGAGGAAATCCAAAGGATTAAGGCTAGCAATCCAGATATCAGCCACAGGGAGGCTTTTAGCACAGCGGCCAAAAACTGGGCACATTTTCCTCATATTCACTTTGGGTTAAAGCTGGATGGCAACAAGCAAGGAAAGTTGGCCCAGGAAGAGGGAACTCAAAAGTCTAATGGGTTCTACTAA 543 0.4586 MDMMATERFGYVQCNFCNTNLAVSVPCNSLLTIVTVRCGHCANLLPVHMGASLQTFPPQDPQSQKQHLSFEESSNREMGSSSKCSKLAALESVEHEQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQGKLAQEEGTQKSNGFY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0868 180 CDD HMG-box_SF 111 147 - -
Dere08g0868 180 SUPERFAMILY HMG-box 100 150 IPR036910 -
Dere08g0868 180 FunFam Axial regulator YABBY 102 173 - -
Dere08g0868 180 Gene3D High mobility group box domain 93 153 IPR036910 -
Dere08g0868 180 Pfam YABBY protein 5 157 IPR006780 GO:0007275
Dere08g0868 180 MobiDBLite consensus disorder prediction 55 83 - -
Dere08g0868 180 PANTHER PROTEIN YABBY 6-RELATED 5 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0868 Dere-ChrDere08 12510342 12515972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0868 4 180 C2C2-YABBY Transcription Factor Family AT1G08465 63.736 3.63e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere08g0868 YABBY 1.9e-68 CL0114