Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0865 ATGGAGGGTCCGGGGATGGAAGAGAATAAAAAGTCTGAAGCACATTTGACTTCAGCCGCAGCCTTTGTGGAGGGTGGAATCCAGGATGCCTGTGATGATGCTTGCAGCATATGTCTGGAAGCATTTTGTGACAGCGATCCTTCAACAGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAGAGAAGCTCTCAATGCCCCATGTGTTGGCAACCCATCAGTCTCAAGGATCCTACCAGCCAGGAATTGCTTGAGGCAGTGGAAAGAGAGAGAAACCTTAGGTTCAATCCACCTAGAAATGCTGCCATATTTCATCATCCAGCCCTGGGGGATTTTGAATTACAACATTTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCTGCTGCAATGGGACGAGCACGTCATATTGCTAGAAGGGAAGGCCAGAGAAACAGGGCATCAGGTCAAGGTCGCCCACATTTTTTGGTATTTTCCACCCATCCTAATTCACCTCCGGTGGCTCCTGCCTCTCCAACTCATGGGGGTGATGGTGAACCGACTCCGGCAATCACTGTTGCTACTCTCTCTCCTCCAAGTACTGTCACTGGGGAAGAATTATCACAACCAACTTCTGTTCCTCCCTTTCAAGCAAACCAGGTTTCTGCTTCAGGATCTGGATCCACTGTTCTTGCTGCTGATCACCAAGGATCATCTTACAACAGTAGGAGATCTCCTAGTCAGTCATCTCCGAGTAGTCAAGACAGAGCAGGGCCATCAGAATTGCAATCATTTTCAGAATCTCTGAAGTCTAGATTAAATGCAGTTTCATCAAGATACAAGGAGTCAATATCCAAGAGCACAAGAGGTTGGAAGGAGAGATGGTTCTCTCGCAACAGCTCTATGTCTGATCTGGGATCTGAAGTCAGAAGAGAGGTTAATGCAGGGATAGCAACTGTGTCACGCATGATGGAACGTCTGGAAACCAGAGACAACAACAGAAATAATAGCAATTCTGCTCCAAGTCATTTAGAAGATGGTTCAGTTGCAGGATCTAATGAACAGCGTTTATCAGATGCTGAAGGCGGCAGTCCCTTGAGAGACAATAGCACAAAAGCATCCTGTGCTGCAGCTTTGTTTTGTCCGAAAGGTGGAAATAGAATTGTCCATTGCTGGATGTGA 1206 0.4652 MEGPGMEENKKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNLRFNPPRNAAIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRASGQGRPHFLVFSTHPNSPPVAPASPTHGGDGEPTPAITVATLSPPSTVTGEELSQPTSVPPFQANQVSASGSGSTVLAADHQGSSYNSRRSPSQSSPSSQDRAGPSELQSFSESLKSRLNAVSSRYKESISKSTRGWKERWFSRNSSMSDLGSEVRREVNAGIATVSRMMERLETRDNNRNNSNSAPSHLEDGSVAGSNEQRLSDAEGGSPLRDNSTKASCAAALFCPKGGNRIVHCWM 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0865 401 CDD RING-H2_RHF2A 22 84 - -
Dere08g0865 401 MobiDBLite consensus disorder prediction 341 377 - -
Dere08g0865 401 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Dere08g0865 401 MobiDBLite consensus disorder prediction 201 276 - -
Dere08g0865 401 MobiDBLite consensus disorder prediction 338 377 - -
Dere08g0865 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 84 - -
Dere08g0865 401 SUPERFAMILY RING/U-box 28 83 - -
Dere08g0865 401 MobiDBLite consensus disorder prediction 151 276 - -
Dere08g0865 401 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Dere08g0865 401 Pfam Ring finger domain 34 75 IPR001841 -
Dere08g0865 401 SMART ring_2 35 75 IPR001841 -
Dere08g0865 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 84 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0865 Dere-ChrDere08 12464153 12469008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0865 32 83 C3H Transcription Factor Family AT4G00335 44.231 6.24e-11 59.7