Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0856 ATGAACTGGAGTAGAGGCAGCATCGTGGGCCATGGCTCATCCGCCACCGTCTCTCTCGCAGCCTCTCCCCAGTCCGGCGAGGTCGTCTTTGCGGTCAAGTCATCGGAGCTTTCTAGCTCGGAGTTGTTACGGAGAGAGCAGAGAATTCTCTCTTCTTTGTCCTCTCCTTATATAGTTAGCTACAAAGGGTGTGACATAACTAGGGAGGATAACAAGGTCTTGTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTTATTCAAGAAACTCGCCGGTACGGTGGCCGGCTCGACGAGCCAGTGATCGCGTACTACACACGGCATATTGTGCAGGGGCTGGAGTATCTACATTCAAACGGGCTGGTACATTGTGATATTAAGGGTACCAATATCTTAATCGGCGAAGATGGAGCCAAAATTGCAGACTTCGGATGTGCTAAGCGGATGGCGGAGAAAGCGGCGGCGCCGATCAGAGGCACGCCGATGTTTATGGGGCCGGAGGTGGCACGTGGGGAAGAACAGGGGTACCCTTGTGACATATGGGCACTTGGGTGCACTGTTATTGAAGTGGCTTCTGGGGTTTCACCATGGCCTAATGTAGGAGACCCTGTTTCAGTTCTTTACCGAATAGCATATTCCGGTGCGGTGCCGGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTACAGAGGAATCCGAAGAACAGATGGACAGCAAGTCAACTGCTGAAGCATCGATTTCTTGAGGAATTCAATTTCAGTTCAAAGCAAATCAAAGAATCTAATTCAAGTTCACCAACAAGTATTTTGGAGCAAGGCTTTTGGAGTTCTGTGGAAGAATCAGAGAGTCTTGGCAATTCGGTCCATAGTCATACAAGTTTCGAAAATTCTCCGGCTGGTAGAATCAGACGGTTAGCTGTGAGTTCAGGGGAACCCAATTGGACAGAGGACGAGTATTGGATCACAACTAGAGGGATTGGAGAAGAAGCTGAAGTTGAAGCTTCATTTAGTGATGGTTCCGAAGAGTTGGAGAAAAGCAATGTCAATAGTAGTAGAATTAATGACTGTTTTTGTGAGGATTACAAATTTAGGGATGTTAGCATTCTAACCAGTAGTCTCAATTTTGAGAGAGGCATTGATAAAGTGCTACTCCATCCAGTATCGAGTTTTTTATAA 1197 0.4695 MNWSRGSIVGHGSSATVSLAASPQSGEVVFAVKSSELSSSELLRREQRILSSLSSPYIVSYKGCDITREDNKVLYNLFMEYMPLGTLIQETRRYGGRLDEPVIAYYTRHIVQGLEYLHSNGLVHCDIKGTNILIGEDGAKIADFGCAKRMAEKAAAPIRGTPMFMGPEVARGEEQGYPCDIWALGCTVIEVASGVSPWPNVGDPVSVLYRIAYSGAVPEIPGFLSEEAKDFLGKCLQRNPKNRWTASQLLKHRFLEEFNFSSKQIKESNSSSPTSILEQGFWSSVEESESLGNSVHSHTSFENSPAGRIRRLAVSSGEPNWTEDEYWITTRGIGEEAEVEASFSDGSEELEKSNVNSSRINDCFCEDYKFRDVSILTSSLNFERGIDKVLLHPVSSFL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0856 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Dere08g0856 398 SUPERFAMILY Protein kinase-like (PK-like) 2 307 IPR011009 -
Dere08g0856 398 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0856 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 297 - -
Dere08g0856 398 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Dere08g0856 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Dere08g0856 398 FunFam Mitogen-activated protein kinase kinase kinase 17 2 308 - -
Dere08g0856 398 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0856 398 CDD STKc_MAPKKK 2 255 - -
Dere08g0856 398 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0856 Dere-ChrDere08 12324700 12325896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0856 2 332 MAP Kinase Kinase Kinase AT5G55090 50.872 2.60e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dere08g0856 Pkinase 3.3e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0856 08 12324700 12325896 Dere07g0547 07 8467346 8468530 CCT
Dere08g0856 08 12324700 12325896 Dere08g0856 08 12324700 12325896 ECH