LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0847	ATGATGAGGAAAGGGCAATGGACACGAGAAGAAGATGCGATGCTGAGAGAGTACGTGAACAAGCATGGAGAAGGAAACTGGAACCACGTGCACAAGAACTCAGGCCTCGCTCGCTGCGGCAAAAGTTGCAGGCTCAGATGGACCAATCACCTCAGGCCTAATCTCAAGAAAGGCTCTTTTTCTCAGTACGAACACCATGTCATCGTCTACCTTCACTCTAAGATCGGTAACCAATGGGCTCGCATGGCCTCTCTGTTACCTGGAAGAACAGACAATGAAATAAAGAATTTCTGGAACACCAGAGCCAAAAGATGCATGAAAGCCGGCTTGCCTCTTTATCCTCCCCAATCCCAAGACATAGCCTCTGTCTTCCATTACATTCTGCCTTCTCACTCTTCCTCTTTCTCTTTTTCTTCTCCCTCTTCCTCCTCTCAGACTCACCCTGATCATCCAAACCTCCATAATTACCTATCCTTTTCTTCTTCTCCAAATCCTCTTCACAATTACACCAATCCACTCCAGCAACTCAATTTTCACAACGCAGCAAGCAGTATAATTAATGGAAATCTGGGTCTTCCATTGCCCTTTCTTTCTCCATATGGGTCATTGTCCTCATCTTCGTCTCTGCCTAATCATAGTTTTGCTGCTCATCCTTATGAACCCCTTCCTTTGGTGCATGGTTTGGACACTGAGACCTCTTCCTGCCAGACCCCACGAAGTTCAGCAGCGACTCCTGCTTCAAGCATTGCTAAGCATGATGACTACTATGAAGTAGCACCATTCTCACCTCAACCGAACAGTGGCCTGCTGGAGGATGTCGTGATGGAGGCTCAGGCCCTTTGTCGCAGTGAGGATTCAACCACACAAAGGGAGTTATCTAACAAGAGGAAATCCCTGGCCACCGAGGAAGAAGACACTGTGACAATGGAGTCAGCTATGACGAATCGTAAAGGCACTAATACTGAAACCCAGAGGGAAGATTTTCTCTCTTTCCCATTGTCAACAGGGAAGAAACCAAGTGATGAGGATTTGTTGAGAAAGGACGATGACTTAATTAGCCTGCTCAAAAATGTTTCCTCAGACTTGTCAATGGCTAGCTCGTACGGTGGAGGAGAAAAGCAATCATTAGAACTTGAGAGTCAACCACACACTTCACCCATCCCCACTGCTCAGGAATTTGCTTGGGTTCTCGGGAATTGCTGGAACGACATGCCTAAAATGATATTCTCCAGTGTTGGCGAGGATTTGGATCCAGGGGCTATGGAAAAGTTACGAATTCCAGTTTTGCTCTCAATCCTCGCTCCAAACAGTTAA	1314	0.4658	MMRKGQWTREEDAMLREYVNKHGEGNWNHVHKNSGLARCGKSCRLRWTNHLRPNLKKGSFSQYEHHVIVYLHSKIGNQWARMASLLPGRTDNEIKNFWNTRAKRCMKAGLPLYPPQSQDIASVFHYILPSHSSSFSFSSPSSSSQTHPDHPNLHNYLSFSSSPNPLHNYTNPLQQLNFHNAASSIINGNLGLPLPFLSPYGSLSSSSSLPNHSFAAHPYEPLPLVHGLDTETSSCQTPRSSAATPASSIAKHDDYYEVAPFSPQPNSGLLEDVVMEAQALCRSEDSTTQRELSNKRKSLATEEEDTVTMESAMTNRKGTNTETQREDFLSFPLSTGKKPSDEDLLRKDDDLISLLKNVSSDLSMASSYGGGEKQSLELESQPHTSPIPTAQEFAWVLGNCWNDMPKMIFSSVGEDLDPGAMEKLRIPVLLSILAPNS	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0847	437	MobiDBLite	consensus disorder prediction	138	157	-	-
	Dere08g0847	437	FunFam	MYB-related transcription factor	3	56	-	-
	Dere08g0847	437	Gene3D	-	59	105	-	-
	Dere08g0847	437	MobiDBLite	consensus disorder prediction	305	330	-	-
	Dere08g0847	437	ProSiteProfiles	Myb-like domain profile.	1	51	IPR001005	-
	Dere08g0847	437	SUPERFAMILY	Homeodomain-like	3	98	IPR009057	-
	Dere08g0847	437	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	2	375	-	-
	Dere08g0847	437	Gene3D	-	4	56	-	-
	Dere08g0847	437	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	55	IPR017930	-
	Dere08g0847	437	MobiDBLite	consensus disorder prediction	288	304	-	-
	Dere08g0847	437	ProSiteProfiles	Myb-like domain profile.	52	102	IPR001005	-
	Dere08g0847	437	MobiDBLite	consensus disorder prediction	282	344	-	-
	Dere08g0847	437	Pfam	Myb-like DNA-binding domain	57	100	IPR001005	-
	Dere08g0847	437	Pfam	Myb-like DNA-binding domain	4	51	IPR001005	-
	Dere08g0847	437	SMART	sant	3	53	IPR001005	-
	Dere08g0847	437	SMART	sant	56	104	IPR001005	-
	Dere08g0847	437	MobiDBLite	consensus disorder prediction	363	385	-	-
	Dere08g0847	437	CDD	SANT	7	51	IPR001005	-
	Dere08g0847	437	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	56	106	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0847	Dere-ChrDere08	12219804	12223271	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0847	1	292	MYB Transcription Factor Family	AT4G26930	39.228	7.91e-55	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere08g0847		Myb_DNA-binding	1.4e-12	CL0123