Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0830 ATGGCTGTGCCTCTAATGATTTGGATTTGGGTAATCCTTGGTGGTGTTGCCCACTGCCAAAGGCCTGCTTCTGTGAATATTGGTGCTGTTTTCACTTATGATTCGGTCATAGGTAGAACTGCAAAGGTGGCGATGCAAATGGCCGTCTCTGACATCAATGCAGACCCCATAGTTCTTAATGGGACGAAACTGAAGTTGATAATGGAGGATGCCAGTTGCAGCGTCTTTCTGGGAGCGATTGGAGCGTTTCGGGCACTTGAGCAAGGGGTTGCAGCCATAATCGGCCCGCAGTCATCTTCCATAGCTCATATGATTTCTCAAATTGCTAATGGTCTCCAAGTGCCTCTTATTTCATACGCTGCCACTGATCCAACCCTGTCCGCCCTCCAGTTTCCTTTCTTTTTTCGTTCAACACCAAGTGACTCTGAACAAATGACTGCAATGGCTGACTTAATTGATTTCTATGGATGGAAAGAGGTCATTGCCGTCTTCTTGGATGACGATTATGGAAGAAATGGAATATCTGCTCTGGGTGATGAACTTGAAAAACGGAGAATGAGAATTGCTCATAAGTTACCTTTAAGTGTTCAGTTTGATCAGGATGAAATCACTAACTTGCTCAATCAATCCAAAACATTTGGTCCTCGTGTCTATGTTGTTCACATAAACCCAGATCCCAGATTAAGACTTTTTAATATAGCCTACAAACTTCAAATGATAGCTAGCGATTATGTCTGGCTTGCCACTGATTGGCTCTCTGCTACCCTAGATTCATTCTCCTCACAGAATCAGACCTCTCTCAATATCTTGGAAGGGGTGGTTGGACTTCGTCCACACATTCCAGATTCTACCCAGAAAAGAGCTTTCATTTCTCGGTGGTTAAAAATGCAGAATGAAAGTGCAGCAAGTGTCGGGTTGAACACATATGGATTTTATGCCTATGATTCAATTTGGGCTGTTGCACGGTCAATTGATATATTCATTAAACTGCACAAAAATATTACATTCTCTGTCAATAATAACTCAAAAGTACTTGACACAGAAGCAGCTGATATTCAGCTTGACAAGCTCAAAGTCTTTGCAAGTGGATCTGATCTGATTAACATATTGTTACAATCAAATTTTACTGGCGTGTGTGGTCAACTTCAATTTAGTTCAGACAGGAATGTCATTACTGGTGGCTATGATGTTATCAATATCAAGCAGATGAAAATTACCATGGTTGGATATTGGTCTAATCATTTAGGATTTTCAGTGGTGCCTCCTGAAACCCTTAAAAAGAAAGGACCTGGTAGGGTTGCCCAAGATCAAAAGCTTCACAATATTACTTGGCCAGGTGGAAAGACTGGAAGACCACGTGGTTGGGTGATTGCGGATAATGCAAGACCACTGAGAATTGGAGTGCCTAGGAGAGCAAGTTTTGTTGAATTTGTCACTGAGCTGCCTGGTAATCATCAAATCCAAGGATACTGCATTGACGTCTTCAAGAAAGCACTGGAGTTCATACCATATGATGTTCCTTATGTATTCATACCTTTTGGGAATGGTCAATCAAATCCCAATTATGATGCACTTGTGAAGATGGTTGCTGAAGATTTATATGATGCAGTTGTTGGAGACATAGCAATTGTGACAAACCGTACAAGGAATGCAGATTTTTCTCAGCCTTTTGCATCAACTGGCCTTGTTATAGTGGCTCCAATCAATAAGGCAAAATCAAGTGCTTGGGTATTTCTCAAACCATTTACAGCGGATATGTGGTGTGTCACTGCAGCTTCATTTATATTAATTGGAGTAGTTATATGGATTCTCGAGCACCGAGTCAATGATGATTTTCGTGGTCCTCCTAAGAGGCAACTTGTGACAATGTTTATGTTCAGCCTCTCAACACTGTTTAAAACAAATCAGGAAAGTACAGTAAGCACACTGGGTCGAATGGTGATGATAGTATGGCTTTTTCTATTGATGGTAATCACAGCTAGCTATACGGCAAGCTTGACTTCAATCCTCACAGTGGAGCAGCTTTCATCACCCATCACAGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATAGGGTACCAAGTAGGGTCATTTGCTTATAACTATCTGACACAGAGTCTTTATATACCAAGGTCAAGACTTGTTCCTCTAGGTAACCCTGAGGAATATGCAAGAGCTCTGCAGCAAGGGCCTACTCGTGGAGGGGTGGCAGCTATAATCGATGAGCTTCTATATGTGGAGTTATTCCTGTCAACACATACTGATTTTGGTATTATTGGACAGCCATTTACCAGAAGCGGATGGGGATTTGCTTTTCAAAGAGAGTCTCCTCTTGCCCTTGACATGTCTACAGCAATTTTGAAACTCAGTGAGAATGGAGAGCTGCAGAAGATACGAGAGCGGTGGTTCTGTAAGATGGGTTGTCCTGAAGAAAGGAAAAGCAACTCAGAGCCTAACCAACTTCAATTGATCAGCTTTTGGGGCCTATATCTATCGTGTGGTATTGTCACTCTTGCTGCTCTTCTAGTGTTTCTGCTGCGAACAATTCGGCAATATGTCCGATACAATCAAAGGCAAAGAGATGTTTCTTCTACATTCCTGGGGGCATCGGAGAGTAAATGTTCCCATGTTATTTATAGCTTTTTAAACTTCATTGATGAGAAGGAAGAAGCCATCAAGAAAATGTTCACTCACACTGAAAATCCACAACAGCAGCAGCAGAACTGA 2730 0.4187 MAVPLMIWIWVILGGVAHCQRPASVNIGAVFTYDSVIGRTAKVAMQMAVSDINADPIVLNGTKLKLIMEDASCSVFLGAIGAFRALEQGVAAIIGPQSSSIAHMISQIANGLQVPLISYAATDPTLSALQFPFFFRSTPSDSEQMTAMADLIDFYGWKEVIAVFLDDDYGRNGISALGDELEKRRMRIAHKLPLSVQFDQDEITNLLNQSKTFGPRVYVVHINPDPRLRLFNIAYKLQMIASDYVWLATDWLSATLDSFSSQNQTSLNILEGVVGLRPHIPDSTQKRAFISRWLKMQNESAASVGLNTYGFYAYDSIWAVARSIDIFIKLHKNITFSVNNNSKVLDTEAADIQLDKLKVFASGSDLINILLQSNFTGVCGQLQFSSDRNVITGGYDVINIKQMKITMVGYWSNHLGFSVVPPETLKKKGPGRVAQDQKLHNITWPGGKTGRPRGWVIADNARPLRIGVPRRASFVEFVTELPGNHQIQGYCIDVFKKALEFIPYDVPYVFIPFGNGQSNPNYDALVKMVAEDLYDAVVGDIAIVTNRTRNADFSQPFASTGLVIVAPINKAKSSAWVFLKPFTADMWCVTAASFILIGVVIWILEHRVNDDFRGPPKRQLVTMFMFSLSTLFKTNQESTVSTLGRMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYNYLTQSLYIPRSRLVPLGNPEEYARALQQGPTRGGVAAIIDELLYVELFLSTHTDFGIIGQPFTRSGWGFAFQRESPLALDMSTAILKLSENGELQKIRERWFCKMGCPEERKSNSEPNQLQLISFWGLYLSCGIVTLAALLVFLLRTIRQYVRYNQRQRDVSSTFLGASESKCSHVIYSFLNFIDEKEEAIKKMFTHTENPQQQQQN 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0830 909 Pfam Ligand-gated ion channel 805 836 IPR001320 GO:0015276|GO:0016020
Dere08g0830 909 SUPERFAMILY Periplasmic binding protein-like I 19 455 IPR028082 -
Dere08g0830 909 CDD GluR_Plant 462 804 - -
Dere08g0830 909 Gene3D - 140 416 - -
Dere08g0830 909 Gene3D - 43 393 - -
Dere08g0830 909 FunFam Glutamate receptor 140 305 - -
Dere08g0830 909 Pfam Receptor family ligand binding region 42 401 IPR001828 -
Dere08g0830 909 Gene3D - 456 574 - -
Dere08g0830 909 Gene3D - 752 811 - -
Dere08g0830 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 804 IPR001638 -
Dere08g0830 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Dere08g0830 909 FunFam Glutamate receptor 701 808 - -
Dere08g0830 909 CDD PBP1_GABAb_receptor_plant 26 421 IPR044440 -
Dere08g0830 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 883 IPR015683 -
Dere08g0830 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 38 54 - -
Dere08g0830 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 98 126 - -
Dere08g0830 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 313 325 - -
Dere08g0830 909 FunFam Glutamate receptor 459 575 - -
Dere08g0830 909 FunFam Glutamate receptor 575 712 - -
Dere08g0830 909 Gene3D - 575 706 - -
Dere08g0830 909 SMART GluR_14 465 806 IPR001320 GO:0015276|GO:0016020
Dere08g0830 909 SUPERFAMILY Periplasmic binding protein-like II 442 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0830 Dere-ChrDere08 12058511 12063467 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0830 2 902 Ion Channels AT2G32400 57.174 0.0 1055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0522 07 8252001 8252881 Dere08g0830 08 12058511 12063467 CCT
Dere08g0830 08 12058511 12063467 Dere08g0830 08 12058511 12063467 ECH