Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0828 ATGGTTAGAGCATTACTCCTCTTGGCTTTCTACTTATGGATTCCCACAGAAGTTATGGGTAGGACAGGAAATAGTAGCGTAGTAAATAATACTGGTCATTTTAGACCAAATTTTGTGAGATTGGGAGCCCTTTTTACGTTTGATTCAGTCATTGGAAGATCGGCTAAACCTGCAATCTTGGCTGCTATTGATGATGTTAATTCTGATACAAGTATTCTTAGCGGGATCAAACTGGAAGTTGTTTTACATGATACAAAATGCAGTGGATTTCTTGGAACAGTGGAAGCTCTGCAATTGATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAGTCCTCTGGAATAGCTCATGTCATCTCTCATGTCGTGAATGAACTCCATGTACCTCTTCTGTCATTTGCGGCAACCGATCCTACTCTTTCTGCTCTGCAGTACCCATACTTTGTCCGCACTACCCAGAATGACCATTTTCAGATGTATGCAATTGCAGACTTGATTGAATATTACGGATGGAGGGAGGTAATTGCCATTTTTGTGGATGATGATAATGGAAGAAATGGAATTTCTGTACTGGGTGATGCCCTGGCACAAAAACGTGCCAAGATTTCTTATAAGGCTGCTTTCCCTCCTGATGCTTCCAGAGCTGCTATAAGTGACTTGTTAACTGGAGTAAACTTGATGGAATCACGGGTCTATGTTTTGCATGTAAATCCTGATTCAGGTTTGACAGTTTTTTCCCTCGCCAAGAAGCTAGGGATGATGAGCAGTGGCTATGTTTGGATCGCAACTGATTGGCTTCCTTCAGTGCTAGATTCACAGGAACCAGCTAACGTTGACACAGTACATGGGGTTGTTGCATTTCGTCATCACACTCCTGATACTGATCTCAAGAAGACTCTTCTCTCTAAGTTGAAAAACCTGAAAGACAATAAGACTGCAGGCTTCAATTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGTAGCCCATGCTCTGCATGATTTTCTCAGTGAAGGTGGAAACATATCTTTCTCCAATGACCCTAACTTGAATGACAAAAATGGAAGCTTGTTGCATTTATCATCACTCCAAACTTTCGAAGGTGGCCCACAGTTTCTCCAGTCAATCCTGAGAATGAACTTCACTGGTGTGAGTGGCCAGATTCAGTTTGATGCAGACAAGAATTTAGTTCATCCATCATATGATATTCTAAACATTGGCGAATCTGGACCCCATATTATTGGTTATTGGTCTAATTACTCTGGTCTTTCAGATTTAGCTCCTGAAAATTTATATACAAAATCTCCTAACAGTTCTGCCGGCAATAAACATCTGTACAGTGTGATATGGCCAGGAGAGACAACAACTACACCCAGGGGGTGGGTATTCCCCAATAATGGAAAGCCTCTGCGTATAGCAGTGCCAAACCGAGTAAGCTACTTGGAGTTTGTTAGCAAAGACAAGAACCCCCCTGGGGTAAAAGGCTATTGCATTGATATCTTTGAAGCAGCCTTAAATTTGTTGCCCTATCCTGTCCCTCGGCAATATATATTATATGGCCACGGTGATAGAAATCCTGACTACAATGAACTCGTGAATCAGGTTGCACAGAATAACTATGATGCAGCTGTTGGAGATATTACTATTGTCACAAACAGGACAAGGGTTGTGGATTTTACTCAACCTTACATGGCATCGGGGCTGGTTATAGTTGTTCCTGTCAAGGAGATAAAGTCAAGTCCATGGTCCTTTCTCAAGCCATTTACTGCACAAATGTGGTGTGTCACTGGTGCCTTCTTTCTTTTTGTCGGAGCTGTTGTGTGGATTCTTGAACACCGGCACAATCATGAGTTCCGTGGACGACCAAGGAAACAACTCATTACAATTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCGCTGGGGCGATTGGTGCTAATAATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACAGTGCAGCAACTTTATTCACAAATTGAAGGCATTGAGAGTTTGATCTCAAGTAATCAACCAATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTCATAGATGAGCTGAACATAGCTGAATCAAGGATCGTTATATTGAAAAATCAGCAAGATTATATCAATGCCCTACAGCGTGGACCAAGTAATGGAGGGGTAGTTGCTGTAGTTGATGAGCTTCCTTATATTGAGCTCCTCATGTCCAACAGCAACTGTCAATTCAGAACTGTAGGGCAAGAATTTACTAGAAGTGGATGGGGATTTGCATTTCAGAGGGACTCTCCACTTGCGGTAGACATGTCTACGGCAATTCTTCAACTGTCAGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTGTTGAGAAGAGAGTGTACTGCAGTTGCACAAAAAAATGATGATAGTTCAAACCAACTATCACTGAGTAGCTTCTGGGGACTCTTCCTCATATGTGGGATTGCATGTCTGCTTGCTTTGATTGCTTTCTGCATTAGGGTGTTTTGTCAATTTACCAAATTCACCCCAGACCCCGATGAGGAGGCCGACGTGGAAATGCGACCACCCATGGCTAGGCCCAAACGCACCACCCGAACTTCTAGCTTTAAGAACTTGATCCTTTTTGCAGATAAAAGAGAGGCTGAGATCAAAGAGAAACTCAGGAAGAGTAACAAACGCCGACGTAGCCAGAGCTCAGACTGGCAATCCAGTTCACCCTCCTAA 2796 0.4245 MVRALLLLAFYLWIPTEVMGRTGNSSVVNNTGHFRPNFVRLGALFTFDSVIGRSAKPAILAAIDDVNSDTSILSGIKLEVVLHDTKCSGFLGTVEALQLMENEVVAAIGPQSSGIAHVISHVVNELHVPLLSFAATDPTLSALQYPYFVRTTQNDHFQMYAIADLIEYYGWREVIAIFVDDDNGRNGISVLGDALAQKRAKISYKAAFPPDASRAAISDLLTGVNLMESRVYVLHVNPDSGLTVFSLAKKLGMMSSGYVWIATDWLPSVLDSQEPANVDTVHGVVAFRHHTPDTDLKKTLLSKLKNLKDNKTAGFNSYALYAYDSVWLVAHALHDFLSEGGNISFSNDPNLNDKNGSLLHLSSLQTFEGGPQFLQSILRMNFTGVSGQIQFDADKNLVHPSYDILNIGESGPHIIGYWSNYSGLSDLAPENLYTKSPNSSAGNKHLYSVIWPGETTTTPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVKGYCIDIFEAALNLLPYPVPRQYILYGHGDRNPDYNELVNQVAQNNYDAAVGDITIVTNRTRVVDFTQPYMASGLVIVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNHEFRGRPRKQLITIFWFSFSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSQIEGIESLISSNQPIGIQDGSFARKYLIDELNIAESRIVILKNQQDYINALQRGPSNGGVVAVVDELPYIELLMSNSNCQFRTVGQEFTRSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLRRECTAVAQKNDDSSNQLSLSSFWGLFLICGIACLLALIAFCIRVFCQFTKFTPDPDEEADVEMRPPMARPKRTTRTSSFKNLILFADKREAEIKEKLRKSNKRRRSQSSDWQSSSPS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0828 931 Pfam Receptor family ligand binding region 56 407 IPR001828 -
Dere08g0828 931 MobiDBLite consensus disorder prediction 870 889 - -
Dere08g0828 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 896 IPR015683 -
Dere08g0828 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Dere08g0828 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 52 68 - -
Dere08g0828 931 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Dere08g0828 931 MobiDBLite consensus disorder prediction 910 931 - -
Dere08g0828 931 FunFam Glutamate receptor 708 816 - -
Dere08g0828 931 SUPERFAMILY Periplasmic binding protein-like II 446 813 - -
Dere08g0828 931 Pfam Ligand-gated ion channel 813 847 IPR001320 GO:0015276|GO:0016020
Dere08g0828 931 FunFam Glutamate receptor 582 712 - -
Dere08g0828 931 FunFam Glutamate receptor 466 582 - -
Dere08g0828 931 Gene3D - 582 700 - -
Dere08g0828 931 FunFam Glutamate receptor 154 339 - -
Dere08g0828 931 CDD GluR_Plant 469 812 - -
Dere08g0828 931 Gene3D - 701 815 - -
Dere08g0828 931 SMART GluR_14 472 814 IPR001320 GO:0015276|GO:0016020
Dere08g0828 931 CDD PBP1_GABAb_receptor_plant 40 426 IPR044440 -
Dere08g0828 931 SUPERFAMILY Periplasmic binding protein-like I 35 463 IPR028082 -
Dere08g0828 931 Gene3D - 466 581 - -
Dere08g0828 931 PIRSF IGluLR_plant 1 931 IPR017103 -
Dere08g0828 931 Gene3D - 58 399 - -
Dere08g0828 931 Gene3D - 154 424 - -
Dere08g0828 931 Pfam Bacterial extracellular solute-binding proteins, family 3 495 812 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0828 Dere-ChrDere08 12049517 12053447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0828 35 779 Ion Channels AT1G05200 70.053 0.0 1123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0828 08 12049517 12053447 Dere07g0522 07 8252001 8252881 CCT
Dere08g0828 08 12049517 12053447 Dere08g0828 08 12049517 12053447 ECH