Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0825 ATGTTCCAGCCAAACATGATGGAAGGTCAGCTGCACCCGCTGGACATGGCTCCCAACACCTCCGAGAGCGATGTCCCCCGCATCCGAGAAGACGACTTCGACAGCGCCACCAAGTCCGGCAGCGAAAACCAGGAAGGCGTTTCCGGCGACGATCATGACCCTCGTCCCAAGAAGAAGCGCTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTTTTTAAGGAGTGCCCACACCCAGATGACAAGCAGAGAAAGGAACTCAGCCGAGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAAATGAAGACCCAGCACGAGCGGCAAGAGAACACTCAACTTAGAACCGAAAATGAGAAGCTTCGAGCAGATAACATGAGATACAGGGAAGCTCTTAGCAATGCCTCATGTCCCAATTGTGGTGGACCAACCGCTATAGGTGAAATGTCTTTTGATGAGCATCATTTGAGAATCGAAAATGCCCGTCTAAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCAAAGTACGTAGGGAAGCCGGTGGTGAACTATCCACTGCTTTCCCCTACGGTTCCCCCGCGTCCACTGGAACTAGGTGTGGGTGGTTTTGGTGGGGAAATGTATGGAGGTGGAGATGTTGTTAGGTCTGTGGGTGGGCCCACCGAAGCTGATAAACCAATGATAATAGAGTTAGCTGTGGCTGCCATGGAGGAACTTGTGAGGATGGCACAGATGGGTGAGCCCTTATGGATGACAACTCTAGATGGAACTACCACTGTGCTAAACGAGGATGAATATATCAGAACGTTCCCTCGCGGAATTGGTCCAAAACCTGCTGGCTTCAAGTGTGAGGCTTCACGAGAAACTGCTGTTGTTATCATGAACCATATTAATCTTGTTGAGATTCTTATGGACGTGAATCAATGGTCCACGGTGTTCTCGGGGATAGTCTCAAAAGCAATGACTCTGGAAGTATTATCAACGGGAGTGGCTGGGAACTACAATGGTGCCTTGCAAGTGATGACGGCAGAGCTACAAGTACCTTCACCTCTAGTGCCAACTCGAGAGAGTTACTTCGTAAGATATTGTAAACAGCATGGGGATGGAACTTGGGCAGTAGTGGATGTATCGTTGGATAATTTGCGCCCTAGTCCTTCAGTTAGATGTAGAAGAAGGCCTTCCGGCTGCTTAATTCATGAAATGCCTAATGGCTACTCAAAGGTGACATGGGTTGAGCATGTTGAAGTGGATGACAGAGGAGTTCATGATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGGGCAAAACGTTGGGTGGCTACTTTGGATCGACAGTGTGAAAGGCTTGCTAGCACCATGGCAAGCAACATACCTACCGGTGATGTTGGCGTGATAACCAACCAAGAGGGGAGAAAGAGTATGCTGAAACTGGCAGAGAGAATGGTGATGAGCTTTTGTGCAGGAGTGAGTGCTTCTACTGCTCACACGTGGACTACAGTGTCTGGAACTGGGGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTGGACGACCCAGGAAGACCTCCTGGTGTTGTTCTCAGCGCTGCTACTTCTTTTTGGCTTCCGGTTCCGCCAAACAGAGTTTTTGATTTCCTCCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGGCAAGATACAGGAAATTGTGTATCTCTTCTTCGGGTAAATAGTGCGAATTCAAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACAGACACAGCGGGATCGTATGTTATATATGCTCCAGTGGATATAGTAGCTATGAACGTGGTTCTTAATGGAGGAGACCCTGACTACGCGGCCCTTCTTCCTTCTGGGTTCGCTATCCTGCCAGATGGAACCACTGGTCATGGTGGATCTCTCTTGACTGTTGCTTTCCAAATCTTGGTTGACTCAGTTCCAACGGCCAAACTCTCTCTTGGATCTGTGGCCACCGTCAATAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTTCTTTATCCTGTGAGGCTGCTTGA 2136 0.486 MFQPNMMEGQLHPLDMAPNTSESDVPRIREDDFDSATKSGSENQEGVSGDDHDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPVVNYPLLSPTVPPRPLELGVGGFGGEMYGGGDVVRSVGGPTEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGTTTVLNEDEYIRTFPRGIGPKPAGFKCEASRETAVVIMNHINLVEILMDVNQWSTVFSGIVSKAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSVRCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSSGHAFGAKRWVATLDRQCERLASTMASNIPTGDVGVITNQEGRKSMLKLAERMVMSFCAGVSASTAHTWTTVSGTGADDVRVMTRKSVDDPGRPPGVVLSAATSFWLPVPPNRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCTDTAGSYVIYAPVDIVAMNVVLNGGDPDYAALLPSGFAILPDGTTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0825 711 SMART START_1 241 461 IPR002913 GO:0008289
Dere08g0825 711 CDD START_ArGLABRA2_like 236 460 - -
Dere08g0825 711 Pfam START domain 242 461 IPR002913 GO:0008289
Dere08g0825 711 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Dere08g0825 711 FunFam Homeobox-leucine zipper protein GLABRA 2 241 460 - -
Dere08g0825 711 MobiDBLite consensus disorder prediction 1 66 - -
Dere08g0825 711 Gene3D - 291 458 IPR023393 -
Dere08g0825 711 SUPERFAMILY Bet v1-like 480 703 - -
Dere08g0825 711 Gene3D - 44 132 - -
Dere08g0825 711 SUPERFAMILY Bet v1-like 232 463 - -
Dere08g0825 711 FunFam Homeobox-leucine zipper protein HDG1 43 131 - -
Dere08g0825 711 Coils Coil 114 141 - -
Dere08g0825 711 CDD homeodomain 58 116 IPR001356 GO:0003677
Dere08g0825 711 SMART HOX_1 56 119 IPR001356 GO:0003677
Dere08g0825 711 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Dere08g0825 711 ProSiteProfiles START domain profile. 232 464 IPR002913 GO:0008289
Dere08g0825 711 SUPERFAMILY Homeodomain-like 44 115 IPR009057 -
Dere08g0825 711 MobiDBLite consensus disorder prediction 24 38 - -
Dere08g0825 711 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 55 706 IPR042160 -
Dere08g0825 711 Pfam Homeodomain 58 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0825 Dere-ChrDere08 12033667 12037106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0825 1 711 Homeobox Transcription Factor Family AT1G05230 78.082 0.0 1162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere08g0825 START 9.5e-61 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0825 08 12033667 12037106 Dere07g0518 07 8224876 8229365 CCT
Dere08g0825 08 12033667 12037106 Dere08g0825 08 12033667 12037106 ECH