Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0823 ATGGCTGATATGGATCAAATCTCTGTTGATGTTTCTGCTGATTTAACAGAACAATCCAATCAAGCTTCCAAGGTTGAATTTTCTGAAGATGAGGAAACCCTAATCACTAGAATGTATAATCTGGTTGGTCAGAGGTGGTCTTTGATTGCTGGAAGGATCCCCGGAAGAACAGCAGAAGAAATAAAGAATTACTGGACTTCAAGATACTCTACTAGCCAATGA 222 0.3919 MADMDQISVDVSADLTEQSNQASKVEFSEDEETLITRMYNLVGQRWSLIAGRIPGRTAEEIKNYWTSRYSTSQ 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0823 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Dere08g0823 73 MobiDBLite consensus disorder prediction 1 26 - -
Dere08g0823 73 CDD SANT 26 65 IPR001005 -
Dere08g0823 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
Dere08g0823 73 Gene3D - 26 68 - -
Dere08g0823 73 SMART sant 23 71 IPR001005 -
Dere08g0823 73 FunFam MYB-like transcription factor 26 68 - -
Dere08g0823 73 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
Dere08g0823 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 70 - -
Dere08g0823 73 SUPERFAMILY Homeodomain-like 25 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0823 Dere-ChrDere08 11973236 11973948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0823 28 67 MYB Transcription Factor Family AT5G35550 70.000 2.50e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere08g0823 Myb_DNA-binding 5.6e-10 CL0123