Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0820 ATGCAGAGGGAATTTCAAATCAATATCAGTATGAGAATTGTTATTGTTACAAGAACAAACCAATTCTTCATTGAAGTAGGTAGCCAGGAAAAAGTTGTCGAAATCAAAAGGAAAATTGATCAAATCCTAGGTGTCCCAGTGGATTCACAAATCCTTACAGTATCCGGGTGGGAGCTAGTAGATGGGTTAGACATGGAAGATTACCCCATTGTCACCGAAGGTACAAAAGTTGACCTCACCATCAAGTCAATGTATCCACATCCTACCTGTTTTAACAAAATCCAAATCGTAGTGAAATTTTCAGCTAGACAGATCAACATAGAGGTGGACAGAACAGATACTGTTCGTAGCTTGAAGGAAAAGATTCACATCATTGATAACACACCTATGAAAAGAATGTCACTTTTCTTCTCAGGTACAGAATTGGATGAAGATTTCCGAAACCTAAGTGAGTATGGAATAAGTGAATTTTCTGAAATTATTGTGTTCCTCAAGACAATGAATCGGTCAAGAGATGATCCTCCGTCAAGGAAGTTAAGTTTGGTGGTACAGACTTCCTCTAGTTTGCTTAATGCAGCTACAATTCCACTGGAAATGAGAGATGCAAGCACGGTCAATGAGTTAAAGCAATTGCTGTTGAGCAGCAAAATTCTGCCAGCTGATGACTATTTGTTCATACACAGGCAGAGGATCATGCGTGATAATTGTAGTCTCAGGTGGCATGGAGTTGAAAATGGGGACTTTCTATATGTATTCAAAGGAACAGTTAGTCGCAGTGGGAGTTTTTGA 789 0.3916 MQREFQINISMRIVIVTRTNQFFIEVGSQEKVVEIKRKIDQILGVPVDSQILTVSGWELVDGLDMEDYPIVTEGTKVDLTIKSMYPHPTCFNKIQIVVKFSARQINIEVDRTDTVRSLKEKIHIIDNTPMKRMSLFFSGTELDEDFRNLSEYGISEFSEIIVFLKTMNRSRDDPPSRKLSLVVQTSSSLLNAATIPLEMRDASTVNELKQLLLSSKILPADDYLFIHRQRIMRDNCSLRWHGVENGDFLYVFKGTVSRSGSF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0820 262 CDD Ubl_ubiquitin_like 96 163 - -
Dere08g0820 262 CDD Ubl_ubiquitin_like 194 252 - -
Dere08g0820 262 Gene3D - 93 165 - -
Dere08g0820 262 Gene3D - 7 82 - -
Dere08g0820 262 SUPERFAMILY Ubiquitin-like 11 81 IPR029071 -
Dere08g0820 262 SMART ubq_7 94 165 IPR000626 GO:0005515
Dere08g0820 262 SMART ubq_7 11 82 IPR000626 GO:0005515
Dere08g0820 262 SMART ubq_7 179 254 IPR000626 GO:0005515
Dere08g0820 262 Pfam Ubiquitin family 190 251 IPR000626 GO:0005515
Dere08g0820 262 Pfam Ubiquitin family 96 165 IPR000626 GO:0005515
Dere08g0820 262 Pfam Ubiquitin family 17 82 IPR000626 GO:0005515
Dere08g0820 262 ProSiteProfiles Ubiquitin domain profile. 179 251 IPR000626 GO:0005515
Dere08g0820 262 ProSiteProfiles Ubiquitin domain profile. 7 70 IPR000626 GO:0005515
Dere08g0820 262 SUPERFAMILY Ubiquitin-like 180 257 IPR029071 -
Dere08g0820 262 Gene3D - 166 258 - -
Dere08g0820 262 PANTHER UV EXCISION REPAIR PROTEIN RAD23 98 165 - -
Dere08g0820 262 SUPERFAMILY Ubiquitin-like 88 174 IPR029071 -
Dere08g0820 262 ProSiteProfiles Ubiquitin domain profile. 94 169 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0820 Dere-ChrDere08 11962138 11963644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0820 94 165 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.247 6.08e-06 43.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0820 08 11962138 11963644 Dere08g0820 08 11962138 11963644 ECH