Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0816 ATGGACTGTATAAATGGTCATCCTGCTCCACTTTACGGCCTATGGAAAAGTCTATTGATCCTTAATTGTACAGTTATAAAACATCTGTTACTTTTTCCCCCTTATATTAGAGAAACCGGTGCTTCTCTGTTCTCACATTCCACTCTACCAATGGAGTCCATTTGCCCCATTGATTCGCGGTGTGCCAATGAAATTTCTGCTCTTCTCAGTCCTCCGTCACCTATTCAAGAATACTATGATAAGCTTTTATCTACAAGGAATTGCAGTAGTATCGTAGTCAAACAGGATGGAAACTTTGGAAAGGGTGTGTATGCTGCCAGGGACTTCAATGAAGGGGAGCTTGTTCTGAAAGACCAAATGCTTGTTGGGGCTCAACATTCTTCCAACAAGATTGACTGTTTTGTCTGTAGCTCCTGCTTTCGTTTCATTAGTTCTGTGGAACTTCAAATAGGAAGGAGGCTTTACTTGCAAGAATTAGGGGCTTCTGAGAGTCATGGTTGTAATATGGATGATTCTTCAAGCGCATCAAAATACAACAATGAAACAGATTCATCTGATGGAGAAGACAATTCATATATCAAAAGGGAGGCTAAAATTCATCTCCCTGAAGGTGTTGTTCAATCATTAATGAGTGGTCATATGATGCTGCCTTACACTGAGGAGTTCTCCTTGCCACCAGCTGTTCCATGTGCTGGTGGATGTGGAGAAGCTTACTACTGCAGCACATCATGTGCAGAGGCTGATTGGAAATCCTATCATTCTTTGCTTTGTACTGGTGAGAGTTCTGATACAGCACATAGGGAGGCACTTCTAAAATTCGTCAAACACGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCTATTTCTTCCACCATAGTAAGGTACCACAAGTTAAAAGAAAGCCGTCTTGTTGAGCAAGGAAAGCATGGCACATCATGTGTTTCAAACCGTTGTGATCTTTCTGTTCTTTTGGAGGCTTGGAGGCCCATATCAATGGGACACAAGAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATATTAGTTCTTCTGATGAAGCTGCATTCAAGATGCAAATAAGAGATCTGGCATTTGAGTCACTCCAGCTTCTTAGGACAGCCATATTTGACAAGGAGTGTGAACCTTTATTCTCCCTGGAAATATATGGACATATTATTGGCATGTTTGAGCAAAATAATCTTGATATGGTAGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGACGATCTAACATATCCTGAAAAGGAAAAAGCAGAGAAAATTACACAACCACTTCTGGATGCTCTTGGTGAAGACTATTCCATTTGTTGTCAGGGAACTGCATTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAGGCTTTCAAAAGAGAGGAGGATAGAGACGGCCAAGCAACGATAATTGCACTGAGGTTCATTCGTAAAGGAGAAGAGATAACCATCTCATACGTCGATGAGGATCTTCCATTTGAAGAGAGACAGGCTTCCCTTGCAGATTATGGTTTCAGATGCAGGTGCCCCAAGGTCATAGGATGCAATGGGTGTACATGTAAAGTCCCGAAAAGCCTCTACAGATCTTCGTATGAAACTCCTGCGAGGGTTTCTACCCTCTGGTCCTCAGTTGGTTTTCTTTGTTTAGCCATTGAAGCCGTTCTGTCGCATTTCAAGTTCAAGGATTTGTACTATTAA 1740 0.4172 MDCINGHPAPLYGLWKSLLILNCTVIKHLLLFPPYIRETGASLFSHSTLPMESICPIDSRCANEISALLSPPSPIQEYYDKLLSTRNCSSIVVKQDGNFGKGVYAARDFNEGELVLKDQMLVGAQHSSNKIDCFVCSSCFRFISSVELQIGRRLYLQELGASESHGCNMDDSSSASKYNNETDSSDGEDNSYIKREAKIHLPEGVVQSLMSGHMMLPYTEEFSLPPAVPCAGGCGEAYYCSTSCAEADWKSYHSLLCTGESSDTAHREALLKFVKHANETNDIFLLAAKAISSTIVRYHKLKESRLVEQGKHGTSCVSNRCDLSVLLEAWRPISMGHKRRWWDCIALPDDISSSDEAAFKMQIRDLAFESLQLLRTAIFDKECEPLFSLEIYGHIIGMFEQNNLDMVVASPVEDYFLYIDDLTYPEKEKAEKITQPLLDALGEDYSICCQGTAFFPLQSCMNHSCCPNAKAFKREEDRDGQATIIALRFIRKGEEITISYVDEDLPFEERQASLADYGFRCRCPKVIGCNGCTCKVPKSLYRSSYETPARVSTLWSSVGFLCLAIEAVLSHFKFKDLYY 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0816 579 MobiDBLite consensus disorder prediction 164 189 - -
Dere08g0816 579 ProSiteProfiles SET domain profile. 89 501 IPR001214 GO:0005515
Dere08g0816 579 CDD SET_SMYD 437 525 - -
Dere08g0816 579 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 64 526 IPR044237 GO:0008168
Dere08g0816 579 Gene3D - 217 259 - -
Dere08g0816 579 Pfam SET domain 100 500 IPR001214 GO:0005515
Dere08g0816 579 Gene3D SET domain 422 528 IPR046341 -
Dere08g0816 579 MobiDBLite consensus disorder prediction 166 181 - -
Dere08g0816 579 SMART set_7 89 507 IPR001214 GO:0005515
Dere08g0816 579 Pfam MYND finger 229 257 IPR002893 -
Dere08g0816 579 SUPERFAMILY HIT/MYND zinc finger-like 232 258 - -
Dere08g0816 579 SUPERFAMILY SET domain 88 525 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere08g0816 SET 1.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0816 08 11920528 11937145 Dere08g0816 08 11920528 11937145 ECH