Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0804 ATGGACATCGACCCCTCATACACCTCCAATTGGCTCTATGATTATGGCTTTGATGTCACCGTTGCCGGAGCTGAGTTCCCGGCCGCAGCTTCCGGTGCTTTCAACTGGGTGCCTCAAACTTTCAACGGTTCTTCCGATACTCGCTTGGACGTGGAATACACACTGGAGAATTCAACTGTCCTGGAGAATGGCTCTTCAAAGCGGTTGAAATCTGAATCATGTAAATCTGGCTCCAAAGCATGTCGTGAGAAATTGCGGAGAAATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTACCTTGGAGCCTGGTAAGCTGCCCAAGACGGATAAGGGTGCGATATTAAGCGATGCAGTTCGAATGTTAACTGAATTAAGAAGTGAAGCTCAGAAGCTGAAGGAAACAAATGATGAATTGCTTGTAAAAATTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAGAATAGGCTGAAGATGGATAAGGAAAAGCTGGAGCAACAGATGAAAACGATGAATGCACAGCCTACCTATCTTTCTCAGCCCTCTGCTGCATTTACTACTCAAGGGCAAACTGCCAGCCACAAACTGATACCTTTTGTTGGTTATCCTGGAATCGCCATGTGGCAATTTTTGCCACCTGCTGCAGTCGACACATCCCAGGATCATCTGCTTCGCCCTCCTGTAGCTTAA 699 0.4621 MDIDPSYTSNWLYDYGFDVTVAGAEFPAAASGAFNWVPQTFNGSSDTRLDVEYTLENSTVLENGSSKRLKSESCKSGSKACREKLRRNRLNERFLELSSTLEPGKLPKTDKGAILSDAVRMLTELRSEAQKLKETNDELLVKIKELKAEKNELRDEKNRLKMDKEKLEQQMKTMNAQPTYLSQPSAAFTTQGQTASHKLIPFVGYPGIAMWQFLPPAAVDTSQDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0804 232 PANTHER BHLH TRANSCRIPTION FACTOR 8 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Dere08g0804 232 CDD bHLH_AtILR3_like 79 154 - -
Dere08g0804 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 124 178 - -
Dere08g0804 232 Coils Coil 115 177 - -
Dere08g0804 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
Dere08g0804 232 Gene3D - 65 123 IPR036638 GO:0046983
Dere08g0804 232 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983
Dere08g0804 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Dere08g0804 232 SMART finulus 80 131 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0804 Dere-ChrDere08 11827913 11830943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0804 9 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.008 3.19e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g0804 HLH 4.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0804 08 11827913 11830943 Dere08g0804 08 11827913 11830943 ECH