Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0774 ATGGTGAGAACTCCATGCTGTGACAAAAGTGGCCTGAAGAAAGGTACTTGGACGCCTGAGGAAGATAGGAAGTTAATTGCATATGTCACTAGGTATGGCTGCTGGAATTGGCGCCAACTTCCCAAGTTTGCAGGTCTAGCGAGGTGTGGGAAGAGTTGCAGACTCAGGTGGCTAAATTACCTGAGGCCAAACGTCAGAAGAGGGAATTACACTCCAGAAGAAGAAGAAACTATTATCAAGCTGCACCAAAAGTTGGGTAGCAGGTGGTCTGCGATTGCTGCAGAGCTGCCAGGAAGAACAGACAATGACATAAAGAACTACTGGCACACGAACCTCAAGAAGCGAATTCACCCCAACTCGGGAACACACGAGAAGTCTGCTAAATTAATCTCCAAGTCAAAGGAGGATTTCCAAGTTGAATCCTGCAGGCAAGAGAATGAAACAGTTCCAATGCCAGTTAACAATGGTCCCTTTGATCAGATAGGGGATTCATGCCCACTGTCTCCTCTTTCGTCCTCCGGCATAACCACAGAGATCACAGCAGCCAGCAACGAGTTGAATTTGCTTGTGGAAGATGAGTTTGCTTTTCTGGAAGCATACGTAGACGCAAATTTCTGGACAGACCCATATGTGGCCGACATTTTCTGCGACCCAACTGAAATAGTGTCACTCCCACCCTCGATTCCACCGTCTGATTACTTTACTAATCCATCCTGTGATGCACAACCTTGGACTCAAAATAATTTGTACGACCAATATACTGGCTTATTCTAA 774 0.4612 MVRTPCCDKSGLKKGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWLNYLRPNVRRGNYTPEEEETIIKLHQKLGSRWSAIAAELPGRTDNDIKNYWHTNLKKRIHPNSGTHEKSAKLISKSKEDFQVESCRQENETVPMPVNNGPFDQIGDSCPLSPLSSSGITTEITAASNELNLLVEDEFAFLEAYVDANFWTDPYVADIFCDPTEIVSLPPSIPPSDYFTNPSCDAQPWTQNNLYDQYTGLF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0774 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 160 - -
Dere08g0774 257 CDD SANT 69 112 IPR001005 -
Dere08g0774 257 FunFam Transcription factor RAX3 7 67 - -
Dere08g0774 257 CDD SANT 16 61 IPR001005 -
Dere08g0774 257 Gene3D - 13 66 - -
Dere08g0774 257 Gene3D - 69 143 - -
Dere08g0774 257 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere08g0774 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere08g0774 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere08g0774 257 SMART sant 66 114 IPR001005 -
Dere08g0774 257 SMART sant 13 63 IPR001005 -
Dere08g0774 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere08g0774 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere08g0774 257 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere08g0774 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0774 Dere-ChrDere08 11491421 11492406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0774 1 213 MYB Transcription Factor Family AT2G31180 48.837 1.85e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g0774 Myb_DNA-binding 4e-13 CL0123