Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0772 ATGTTCATGGTTCAGTTTTGTGTCAAAGAGATGGTGAGAGCTCCTTTCTATGACAAAAGTGGAGTGAAGAAAGGTGCATGGAGTAGAGATGAAGATGACAAACTCAGAGCTTATATTCAGAGATATGGTCATAGCAATTGGCGTCAACTCCCCAAGTTGGCAGGTTTAGCAAGGTGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTGCGGCCAAATCTAAAACATGGGAACTACACCCAAGAGGAAGTGGAACTAATCGTCAAATTACGCCAACAACTTGGGAACAAATGGTCATTGATTGCTCAAAAACTACCTGGGAGAACGGACAATGATATAAAGAACTATTGGCATAGCCATATAAAGAAGGGCTCGAAGCACAGCGACACTGAACCTGAGGTGATATGTTCGAAGCCAATTGAATATACAGAATCTGAAAGCCAAAGTGTGTTAGTGGGAGGTGAGTCAGAGTCTCACCATATTCTGGAAAGCTCATTGACATGGCCCATGTCAACAGAAACGTCTAGCACCCGAGAGAACCACTCATCCTTTACCTCAACCTCAAATGATGCACAATCAAGTTCAATCATGAAGTGTTCCAGAGAGGAGAACAGTGTTGCTTCCTGGGAAATATTACAAGTTATAAGCAGCGATTTTTGGAGTAGACCATTTTTAGTAGAAAGTACGTCTAGTTATGACATTGCCCCAACTTTTTCATACCCTTACGAGGGTACAGATTTGAGTGATCTACACGGCATTCTAGATTGGTAA 774 0.4212 MFMVQFCVKEMVRAPFYDKSGVKKGAWSRDEDDKLRAYIQRYGHSNWRQLPKLAGLARCGKSCRLRWMNYLRPNLKHGNYTQEEVELIVKLRQQLGNKWSLIAQKLPGRTDNDIKNYWHSHIKKGSKHSDTEPEVICSKPIEYTESESQSVLVGGESESHHILESSLTWPMSTETSSTRENHSSFTSTSNDAQSSSIMKCSREENSVASWEILQVISSDFWSRPFLVESTSSYDIAPTFSYPYEGTDLSDLHGILDW 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0772 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 202 - -
Dere08g0772 257 MobiDBLite consensus disorder prediction 173 196 - -
Dere08g0772 257 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Dere08g0772 257 FunFam Transcription factor RAX3 17 77 - -
Dere08g0772 257 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Dere08g0772 257 CDD SANT 79 122 IPR001005 -
Dere08g0772 257 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Dere08g0772 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Dere08g0772 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Dere08g0772 257 Gene3D - 79 149 - -
Dere08g0772 257 CDD SANT 26 71 IPR001005 -
Dere08g0772 257 Gene3D - 17 77 - -
Dere08g0772 257 SMART sant 23 73 IPR001005 -
Dere08g0772 257 SMART sant 76 124 IPR001005 -
Dere08g0772 257 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Dere08g0772 257 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0772 Dere-ChrDere08 11455238 11456286 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0772 11 206 MYB Transcription Factor Family AT4G09460 44.898 2.97e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g0772 Myb_DNA-binding 1.9e-12 CL0123