Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0766 ATGGATTTTCAGCCCCTTTCGTATAGCGGTTCAGAGACATGGGCTTTGCAAGAGGAAGAATTGATTGTTAGTGATGCTACGTGTGTAAATAGTGATGCTCCAACTCTTGGTGTTTATAATCTGGCTCCACACTTTCGAGCTATCCGTGTGGAAATTATCCTCATTTCATCAATGGGAAGAGCACCTTGCTGTGACAAAAATGGACTCAAGAAGGGTCCATGGACACCCGAGGAAGATCTAAAGCTCATCAACTACATTCAGACTCATGGACCAGGCAATTGGCGAACCCTCCCCAAGAATGCTGGTCTGGAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTGAGGCCCGATATCAAGAGAGGAAGATTCTCATTTGAAGAAGAAGAGACCATCATTCAGTTGCACAGTGTCATGGGAAACAAATGGTCGGCTATAGCAGCACGCTTACCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACTCACATCAGGAAGAGGCTGCTTCGAATGGGAATCGATCCAGTTACTCATGCCCCACGCCTTGACCTTCTTGACATATCCTCTATTCTAAGGTCAATGCTGACCAACCAATCGCTTCTGAATCTGCAAGGCTTAATGGGGGCTCAAACCTTGATGAACCCGGAATTGTTGAAGCTTGCCACCGCTCTGTTAACGTTGAAGAATGAGAACCCAGATTTGGTTTCACAGAACCTACAACAAATCCAAGCTGGGAATTATCAGGTTGATAGCCAAGTTGCCCCATTTAGTCAGTTTCAGATGCCAACTCAAACTACCAATGTGGGAGGCCTCTCAGGCAATATCACAAACATGAGCTCTGCAAGTTCGATGGAGAATTCATTTCCCTCCTATATGTGTGAGAATCTCAATTCGCAACAAAACCAAGTGGATTTGCTAGGAAACCCAACATTTGGGCAGGGTCTAAACAATGAAAATGTCCAAAACATAGGGTATGAGTCAGTTCTATCAACGCCTTTGTCGAGCCCAACCCCATTGAATTCATCATCGACGTATGTGAATAGCAGCGCTGAGGAGGAGAGAGATAGCTACTGCAGCGGCCTATTCAAGTTTGAAATTCCAGAGAGTCTGGACATCAGTGACTTCCTGTAA 1146 0.4529 MDFQPLSYSGSETWALQEEELIVSDATCVNSDAPTLGVYNLAPHFRAIRVEIILISSMGRAPCCDKNGLKKGPWTPEEDLKLINYIQTHGPGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDISSILRSMLTNQSLLNLQGLMGAQTLMNPELLKLATALLTLKNENPDLVSQNLQQIQAGNYQVDSQVAPFSQFQMPTQTTNVGGLSGNITNMSSASSMENSFPSYMCENLNSQQNQVDLLGNPTFGQGLNNENVQNIGYESVLSTPLSSPTPLNSSSTYVNSSAEEERDSYCSGLFKFEIPESLDISDFL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0766 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 122 IPR017930 -
Dere08g0766 381 SUPERFAMILY Homeodomain-like 68 165 IPR009057 -
Dere08g0766 381 FunFam Transcription factor MYB39 126 187 - -
Dere08g0766 381 FunFam MYB-related transcription factor 70 123 - -
Dere08g0766 381 CDD SANT 126 169 IPR001005 -
Dere08g0766 381 ProSiteProfiles Myb-like domain profile. 66 118 IPR001005 -
Dere08g0766 381 SMART sant 70 120 IPR001005 -
Dere08g0766 381 SMART sant 123 171 IPR001005 -
Dere08g0766 381 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Dere08g0766 381 Pfam Myb-like DNA-binding domain 71 118 IPR001005 -
Dere08g0766 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 58 304 - -
Dere08g0766 381 Gene3D - 126 173 - -
Dere08g0766 381 ProSiteProfiles Myb-like domain profile. 119 169 IPR001005 -
Dere08g0766 381 Gene3D - 70 123 - -
Dere08g0766 381 CDD SANT 73 118 IPR001005 -
Dere08g0766 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 173 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0766 Dere-ChrDere08 11409980 11414609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0766 58 381 MYB Transcription Factor Family AT4G21440 51.381 9.06e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere08g0766 Myb_DNA-binding 3.2e-15 CL0123