Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0725 ATGTCTACGGCTGAGAAAGCTACTGTTAGCCACACCATCGTACGGACAAGAAACAAGAGCTCTGCTTTTGAGCTTGAGAGAGCGAGCGGAATTTTACTATTGGTGCCGATGGCCGCAGCTAGGAACAGTGGCAAATCCACCAAAAGTGGTGGAGAAAGCCGAGATTGGGAGATTGAAAGGGGTAAAGATCTCGACTTTAGCAGTGAGAGGCGGCAATGGAAGCCAGTTTTTGATGACGCTTCCGTGTCACATAGGCCTTTCAAGAAGATCCGCAGCCCCCAACGTGAAAACTTGAATCAAAATCAACCCTCTGTTTCCGTGCTACCACCTCCTTCCTCCTCAATTCCCTCTTCGCTTCCTCCTTTGTCATCCTCGAGAATTGTTTTCCCTTTTGCCTTCGATGGTTCTCAACAGCCCGTGCAATTTCCCTACCAACAATTTGGTTCCACAAATTTGCCTCTGTTTCGTCCTCCATTTCAGGCATCACAAAATCAACAACAGATGATATCTTTTGGGCCCCAACAGCAGAACATGGGCTACCCACAGTTCTTAGCCCACGATTCTGGGATCGCTCAGCAACAACATCATCAGCAGCAACTTATTCAGTATTGGAGAGACGCACTGAATCTGAGTCCGAGAGGAAGGATGATGATGATGAACAGAGTAGGGCCCGACGGGAGGCCAATGTATAGGCCACCTGTTCAGCCTATAAATACTACGAAGCTCTATAGAGGAGTGAGGCAACGTCATTGGGGGAAATGGGTGGCTGAGATTCGTCTTCCTCGCAACAGGACCCGACTCTGGCTGGGAACTTTCGACACAGCAGAAGATGCTGCCATGGCTTATGATCGCGAGGCCTTCAAGCTGAGAGGAGAGAATGCCAGGCTCAATTTCCCCGAGCTCTTTCTCAATAAAAGTAAAACACCCTCGGGAGCCCCAGACTCAGCTGCTTCTTCTCCCTCTACTCCGCATCAAGGATCAACGTCAAAGCAAACTGAGTCAGCTCCAGGAGGTCGTATTGTGGAGGCTCCGATCACCGAGAAGACGCCGCCGCCACCCCAACCACCACCGGAAGAGAATACCGACAATGAATCAGGAATTGGGTCGAGTGACGCTACAATGAGTGACGAAGTTCAGGCTGCTGCTAACACTGGAACAGGGGAGGGCAGTTCGGCGTCGCAAGAATTGGTTTGGGGCGAAATGGCCTCTTGGTTCAATGCAATTCCAGCGGGTTGGGGTCCGGGCAGTCCTGTGTGGGATGATTTGGACACGTTTCAGTCACAACTTCCTTTTGTCAATCCAAATGACCAAGAATTTAATGATGCAGATGCTCGTAGACAACAAGAAGATAACACAGGACCAGCAGGTTCTTCCACTTCCTCTTCTTGTCCAGTTAGACCCTTCTTCTGGAAGGGTCAAGATTGA 1425 0.5004 MSTAEKATVSHTIVRTRNKSSAFELERASGILLLVPMAAARNSGKSTKSGGESRDWEIERGKDLDFSSERRQWKPVFDDASVSHRPFKKIRSPQRENLNQNQPSVSVLPPPSSSIPSSLPPLSSSRIVFPFAFDGSQQPVQFPYQQFGSTNLPLFRPPFQASQNQQQMISFGPQQQNMGYPQFLAHDSGIAQQQHHQQQLIQYWRDALNLSPRGRMMMMNRVGPDGRPMYRPPVQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKSKTPSGAPDSAASSPSTPHQGSTSKQTESAPGGRIVEAPITEKTPPPPQPPPEENTDNESGIGSSDATMSDEVQAAANTGTGEGSSASQELVWGEMASWFNAIPAGWGPGSPVWDDLDTFQSQLPFVNPNDQEFNDADARRQQEDNTGPAGSSTSSSCPVRPFFWKGQD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0725 474 MobiDBLite consensus disorder prediction 308 335 - -
Dere08g0725 474 Gene3D AP2/ERF domain 242 300 IPR036955 GO:0003700|GO:0006355
Dere08g0725 474 MobiDBLite consensus disorder prediction 428 474 - -
Dere08g0725 474 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 MobiDBLite consensus disorder prediction 84 119 - -
Dere08g0725 474 Pfam AP2 domain 243 291 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 MobiDBLite consensus disorder prediction 93 108 - -
Dere08g0725 474 MobiDBLite consensus disorder prediction 304 371 - -
Dere08g0725 474 MobiDBLite consensus disorder prediction 450 466 - -
Dere08g0725 474 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 PRINTS Ethylene responsive element binding protein signature 265 281 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Dere08g0725 474 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 41 422 - -
Dere08g0725 474 FunFam Ethylene-responsive transcription factor 2 241 300 - -
Dere08g0725 474 SUPERFAMILY DNA-binding domain 242 300 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0725 Dere-ChrDere08 10995279 10997396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0725 37 452 AP2-EREBP Transcription Factor Family AT2G20880 40.793 1.62e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere08g0725 AP2 3.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0725 08 10995279 10997396 Dere08g0725 08 10995279 10997396 ECH