Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0719 ATGCCGATCACAACAAGTTATATAAAACCCACTGAAAGCCCTCCTCTTCCTTGGCTTAACGTTAACGGTCTCATCCAAAGAGCCTCTGCCGCCATCAAACTGTCGGCAACGCTCCACCACCACCACCACCCCAACTGTTTTCTTGGCTTCTGCGCTCAACGGAGCTCAGTTTTCTTACTGTTAGCGCTGGTGCCTTCCGTTTTTGGGGCAATGTACCACCGTCGTACTTCCGCCGGACTATTTTTAAGCTTCTGCCTTTGCTTGGCGCTCAAAGCTTCTCTACTATGCGCCCAGGCACAGCTTCAGCACCACCGGGTTCCACTCCCGGACCCGCATTGGTACACCGGCATGGCCACCTGGTACGGCGACCCCGAAGGCGATGGCAGTACCGGTGGGGCATGTGGGTACGGTAGCTTAGTGGACGTGAAGCCGTTGAGGGCAAGGGTAGGGGCAGTGGGTCCAGTACTGTTCAAGAATGGTGAAGGGTGTGGGGCGTGCTACAAGGTGAAGTGCTTGGACAAGAGCATATGCTCGAGGCGAGCCGTGACGGTCATAATAACGGACGAGTGTCCGGGGTGCCCCTCCGACCAAACCCACTTCGACCTCAGTGGCGCGGCCTTTGGGCGCATGGCTATAACTGGTGAAAATGGTCAACTGAGGGACCGAGGCCAACTCCCCGTCATTTACCGACGAACACCATGTAAATATCCAGGCAAACACATTGCCTTCCATGTGAATGAAGGTTCCACACCTTTTTGGCTATCACTTTTGGTGGAGTTTGAGGATGGAGAAGGAGATATTGGCTCTATGCATATTCGAGAAGCAGGGTCTATAGAGTGGCTAGAGATGAATCATCTGTGGGGTGCAAATTGGTGCATTATTGGTGGACCTTTGAGGGGACCGTTTTCAGTGAAACTAAGCACATCCACCGGGAGATCTATGTCAGCTAGAGATGTTATTCCAAGCAGTTGGTCTCCAAAAGCCACTTACACCTCTCGCCTTAATTTCTACCCTTAG 1017 0.528 MPITTSYIKPTESPPLPWLNVNGLIQRASAAIKLSATLHHHHHPNCFLGFCAQRSSVFLLLALVPSVFGAMYHRRTSAGLFLSFCLCLALKASLLCAQAQLQHHRVPLPDPHWYTGMATWYGDPEGDGSTGGACGYGSLVDVKPLRARVGAVGPVLFKNGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAITGENGQLRDRGQLPVIYRRTPCKYPGKHIAFHVNEGSTPFWLSLLVEFEDGEGDIGSMHIREAGSIEWLEMNHLWGANWCIIGGPLRGPFSVKLSTSTGRSMSARDVIPSSWSPKATYTSRLNFYP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 318 332 IPR007118 GO:0005576
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 280 294 IPR007118 GO:0005576
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 222 238 IPR007118 GO:0005576
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 153 171 IPR007118 GO:0005576
Dere08g0719 338 PRINTS Expansin/Lol pI family signature 112 127 IPR007118 GO:0005576
Dere08g0719 338 CDD DPBB_EXPB_N 113 234 - -
Dere08g0719 338 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 131 239 IPR007112 -
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 211 226 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 308 325 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 151 162 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 243 258 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 PRINTS Major pollen allergen Lol pI signature 259 274 IPR005795 GO:0005576|GO:0019953
Dere08g0719 338 Gene3D - 235 333 IPR036749 -
Dere08g0719 338 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 252 332 IPR007117 -
Dere08g0719 338 Pfam Lytic transglycolase 154 227 IPR009009 -
Dere08g0719 338 Gene3D - 102 234 IPR036908 -
Dere08g0719 338 SMART dpbb_1 149 229 IPR007112 -
Dere08g0719 338 FunFam Beta-expansin 3 236 337 - -
Dere08g0719 338 PANTHER EXPANSIN-B3 90 336 - -
Dere08g0719 338 Pfam Expansin C-terminal domain 241 321 IPR007117 -
Dere08g0719 338 FunFam Expansin B3 97 235 - -
Dere08g0719 338 SUPERFAMILY PHL pollen allergen 239 332 IPR036749 -
Dere08g0719 338 SUPERFAMILY Barwin-like endoglucanases 110 238 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0719 Dere-ChrDere08 10956706 10960042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0719 86 293 Expansin Gene Family AT4G28250 67.308 3.15e-95 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0719 08 10956706 10960042 Dere08g0719 08 10956706 10960042 ECH