Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0712 ATGATTCTCACATTGAATGTTTGTTCTTTCCAGATTTTGGCTCTGGAGAGATTCCATTGTGAAATAAAAAATATGGCCTTAGATGAGTACTTGGAGGATTCTGTACGCCAAATTGATGCCTCTGAAGATAAATCCAATTCCCAGAAGTGGAATTCTGCCACTCAAGCCATTGGAGATTCTGATAGGGATGCTTCTGGTGGCTTTGAGTGCAATATCTGCCTTGATTATGTGCAAGAGCCAGTGGTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATTTCTACACTGTCTGTCATGAAAACGAAGAGCCAGAGAGGCCACGCTGCCCGGTATGTAAATCAGAAGTCTCTCAATCTGCCCTAGTTCCGCTATATGGCCGTGGCCAAACCACAGCACCTTCCAAATTCAAGTCTCACCATGCAGGGACTATCATACCTCAAAGACCTCCTGGTCCTGTATGGGCTCATGACTCACCAAGGTCATATCATACTACTACTGCTTCTCAACCAGCTTCTCAATTTCATCCAACCCATTATCCTCCTCATCCACAACAGTACAATGCATTTGATACAACACTTGGAGTTTTTGGTGGGATGATATATGCAAGAGTCTTTGGTAATCAGTTGACAAACATGTACACTTACCCTAATTCGTATAATCTTGCGGGGAACAGCAATCCGAGGATCAGAAGGCAATTGATGCAAGCCAATAAGTCACTCAGTAGAATCTGTTTTTTCCTCCTTTGTTGTACAGTTTTGTGTCTTCTCTTATTCTGA 795 0.4314 MILTLNVCSFQILALERFHCEIKNMALDEYLEDSVRQIDASEDKSNSQKWNSATQAIGDSDRDASGGFECNICLDYVQEPVVTLCGHLYCWPCIYKWLHFYTVCHENEEPERPRCPVCKSEVSQSALVPLYGRGQTTAPSKFKSHHAGTIIPQRPPGPVWAHDSPRSYHTTTASQPASQFHPTHYPPHPQQYNAFDTTLGVFGGMIYARVFGNQLTNMYTYPNSYNLAGNSNPRIRRQLMQANKSLSRICFFLLCCTVLCLLLF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0712 264 Pfam Zinc finger, C3HC4 type (RING finger) 70 118 IPR018957 GO:0046872
Dere08g0712 264 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Dere08g0712 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 134 IPR013083 -
Dere08g0712 264 SMART ring_2 70 118 IPR001841 -
Dere08g0712 264 SUPERFAMILY RING/U-box 66 131 - -
Dere08g0712 264 ProSiteProfiles Zinc finger RING-type profile. 70 119 IPR001841 -
Dere08g0712 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 36 261 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0712 Dere-ChrDere08 10822010 10822804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0712 63 264 C3H Transcription Factor Family AT4G28270 42.029 1.51e-48 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0712 08 10822010 10822804 Dere08g0712 08 10822010 10822804 ECH