Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0701 ATGGGTTGCATATGCTCCAAGACTTCAGCTGTGGAAGACAGCCGAGAAGGTTTGACAACGAAATTGTCATCATTGAGCAAAAGGTCATCGGAGCTGAATGTTTCACGATTGAATTCATCAAAAAGGGATGAGGGAGTTTGGACAAAAAATTTGTTCGACGGCAGTGATGTAAAAGTTTCATTGATTGGCAAGAAAACCAATGGTTCAGTAAAGTTGTATGATGATCAAATTGGGGAGGAGAAAATTGAGAAACCTGAATTAACCGTTCTTAATCATCCTGGGCTAGGAAAGGTTCCGAAGGCTACAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGACCTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCCCGGAGTGCAAATACTTTCGAGAGGTTATATAAAATTGGCCAAGGAACATACAGTACTGTTTATAAGGCACGTGATGTGACTCACCAAAAGATCGTTGCTTTGAAGAGAGTACGCTTTGATAATCTTGACCCTGAAAGTGTCAAGTTTATGGCGAGAGAAATTTTTGTACTCCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAGGGCTTGATAACATCACAAACATCTCGTAGCTTGTACCTTGTTTTTGAGTATATGCAACATGATCTTACAGGACTTGCTTCACGTCCTGGCATTAAGTTTTCAGAACCCCAGATTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGGATCATTGTCACAGTCGTGGTGTTCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAGATTGCAGATTTTGGTTTGGCAAGTTTTTTTGACCCCCATCACAATGTTCCATTGACCAGCCGAGTGGTGACTCTGTGGTATAGACCACCAGAACTTTTACTTGGAGCCTCTCATTATGGAGTTGCAGTGGATTTGTGGAGCACTGGTTGTATATTAGGGGAACTATATTCTGGCAGGCCCATACTTCCAGGAAAAACGGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGTGGCTCACCATCTGAGGATTACTGGCTTAAATTGCGGTTGCCACATTCAACAGTATTCAAACCTCCTCACCACTATAGACGTTATGTTGCTGAAACATTCAAGGAATATCCTCCTGCTGCTGTGAGGCTTATGGAGACACTACTTTCCATAGACCCAGCACATCGAGGAACAGCAACTACGGCTCTAAAAAGTGAGTTCTTTACTACGGAACCCCTTCCTTGTGATCCATCAAGTTTACCAAGATATCCTCCCAGCAAAGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGGAAGGGAGCAGAAAGTTGGCATGGGAGTTAGACGAGAAAAAGAACTTCAGGCACTTGCGAGTAATAACAATGCTGACCCACGCATATCAATGCAGCATGGACGTCATTCTGGCTCAAAGAGCCGAAGTGAATTGTTCAATCCTCCCAGAGAATCTGCATCTGGTTTGTTGGTTTTTCCGCATAAACAGCCAGAAGATGTTAAAGAAATGGGAAATAATTTCTCCGGGCATCTCTTTAAGAGGCCTTCACATTCAGGTCCATTGGTTCCGGGCCCTGCCTGGGTAAAGGTTGGGAAGGACATGGATGAGCAACATCTTGGTTCAAACAGAGTCAACCCGTCAAAATTATCTGGTTTAGTTGCATCTAGGACTTTAGTTTCTAAAGATCAGGAGGAAAATTCACTTTCCTCGCAGCCTGGAAAAACAGTTGATGTACGAAAATCTGTGGAGTCAATTCATGGATCAGAGTCAAGAAGAAGGCAGGCTCAAAAACACCAGTCTCAGAGAATTGTTGATCTCTGTCATATAGAACATGGAAGGACCCCAACTAAAGAGTTAACTGCGGAAGGACGTGCCAGGGGAAACAAGATCTATCTCTCTGGCCCATTAATGGTATCGTCAAACAACATGGATCAGATGCTTAAAGAGCATGATCAAAAGATCCAGGAATATTCAAGACGAGCCAGAATGGACAAGTCAAGAGGTGAGAAAGTTCGTGCACGAAAGTAG 2094 0.4341 MGCICSKTSAVEDSREGLTTKLSSLSKRSSELNVSRLNSSKRDEGVWTKNLFDGSDVKVSLIGKKTNGSVKLYDDQIGEEKIEKPELTVLNHPGLGKVPKATEGEQVAAGWPTWLSSVAGEAIKGWIPRSANTFERLYKIGQGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREIFVLRRLDHPNVIKLEGLITSQTSRSLYLVFEYMQHDLTGLASRPGIKFSEPQIKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHNVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRYVAETFKEYPPAAVRLMETLLSIDPAHRGTATTALKSEFFTTEPLPCDPSSLPRYPPSKEIDAKLRDEATRRQGAVGGREQKVGMGVRREKELQALASNNNADPRISMQHGRHSGSKSRSELFNPPRESASGLLVFPHKQPEDVKEMGNNFSGHLFKRPSHSGPLVPGPAWVKVGKDMDEQHLGSNRVNPSKLSGLVASRTLVSKDQEENSLSSQPGKTVDVRKSVESIHGSESRRRQAQKHQSQRIVDLCHIEHGRTPTKELTAEGRARGNKIYLSGPLMVSSNNMDQMLKEHDQKIQEYSRRARMDKSRGEKVRARK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0701 697 FunFam probable serine/threonine-protein kinase At1g54610 121 216 - -
Dere08g0701 697 MobiDBLite consensus disorder prediction 669 697 - -
Dere08g0701 697 CDD STKc_CDK9_like 134 418 - -
Dere08g0701 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Dere08g0701 697 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0701 697 FunFam probable serine/threonine-protein kinase At1g54610 217 458 - -
Dere08g0701 697 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0701 697 MobiDBLite consensus disorder prediction 582 623 - -
Dere08g0701 697 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Dere08g0701 697 MobiDBLite consensus disorder prediction 601 623 - -
Dere08g0701 697 MobiDBLite consensus disorder prediction 475 503 - -
Dere08g0701 697 Coils Coil 662 682 - -
Dere08g0701 697 MobiDBLite consensus disorder prediction 475 510 - -
Dere08g0701 697 Gene3D Transferase(Phosphotransferase) domain 1 217 455 - -
Dere08g0701 697 Pfam Protein kinase domain 135 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere08g0701 697 PANTHER CELL DIVISION PROTEIN KINASE 132 424 - -
Dere08g0701 697 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Dere08g0701 697 MobiDBLite consensus disorder prediction 582 599 - -
Dere08g0701 697 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0701 Dere-ChrDere08 10711834 10717171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0701 126 461 Core Cell Cycle Gene Families AT5G10270 50.568 1.80e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere08g0701 Pkinase 1.1e-66 CL0016