Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0697 ATGGAACAGCAACGAAGTCAAGCTTCTTCTTCCACCAAGATCGAAAGAAGGCTTGTAGAGAAAAACAGAAGAAACCAGATGAAGATACTCTACTCCAAACTCATCTCTCTTCTCCCAAACTTTAACCCCAAGGAAATGGTTCCATTACCTGATCAGATAGACGAGGCAATAAACTACATAAAGAGCCTAGAGGGAAAGGTGAAGATGGCTCAGGAGAAGAAAGAAAGCTTAATCGGAAAGAAAAGGTCACGTTCTTGCTGCTGCAGCTCTAGTCTCTTTGAGAGTAAGGGAAGCCTGAAATCACCACTGATAGAGATTCATGAACTGGGTTCGTCGCTAGAAGTAGTTCTGACTTGTGGGTTGGATAATCAGTTCATTTTCTATGAGATTATTCGCATACTGCACGAAGAGAACGTGGAGGTCGTAAGTGCCAATTCCTCACTCACCGGAGATTCAATGCTTAACATTGTACATGCACAGATTCAGCCATCTTTGTTTGAATTTGGAGCAACCAAAGTAAGTGAGAGACTGAAAAGGTTTGTGTATGGATCTTCCAGTGACGTAGAAGTACAGCCCGAGTTTCGGGATTTCCAAATTGGTACTGATACATGGGACTTCTAA 621 0.4251 MEQQRSQASSSTKIERRLVEKNRRNQMKILYSKLISLLPNFNPKEMVPLPDQIDEAINYIKSLEGKVKMAQEKKESLIGKKRSRSCCCSSSLFESKGSLKSPLIEIHELGSSLEVVLTCGLDNQFIFYEIIRILHEENVEVVSANSSLTGDSMLNIVHAQIQPSLFEFGATKVSERLKRFVYGSSSDVEVQPEFRDFQIGTDTWDF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0697 206 Gene3D - 1 86 IPR036638 GO:0046983
Dere08g0697 206 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Dere08g0697 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 6 182 - -
Dere08g0697 206 SMART finulus 17 69 IPR011598 GO:0046983
Dere08g0697 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 82 IPR036638 GO:0046983
Dere08g0697 206 Coils Coil 53 80 - -
Dere08g0697 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Dere08g0697 206 FunFam Transcription factor bHLH162 4 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0697 Dere-ChrDere08 10666798 10667641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0697 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.362 8.09e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g0697 HLH 5.7e-05 No_clan