LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0691	ATGAAGAAACAAAAAAGAGCCAGCGAACGCGCAGTTTCAGGAGCAGAGCCGTTCCCAGAAAGGCTCTTCCTTTCCATGTCACTGCACGCTCTCAAGGAAACTCTCAAGCCTTGTACAAGTCAACCATCTTCTACATCGATTGGCCAAACGCAGTCTTCGATTTTCCGTGATTCCAACCTCGCAATCCCTAGGAAACCCCCAAAATCCTCTCTCACTCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTGTTCCCCCAATCCAGCCTCACAATTCAACTAAGCGAGAAAGGGTACAGAATAGTGGTAAGTTCGAGCATGAGGAAGAAGAAGAGGACGGGGAGGATGAAGAGGTGGAGCCAGAGCTGAAGAGGGAAAAATTCGGTGGAGATAAATTGTGTCAGCTTCAGCTTGATCACACAGGACCCTTTGAGCCTCTGGTCTTATCTTCGGATCAAGAAGTTCCTGTGGTACAGGTTCCTGCATCTATCAATTGTAGACTGCTTGAACATCAAAGAGTAGGAGTTAAGTTTCTGTATAGTTTGTATAGGAACAATCATGGAGGCATTCTTGGAGACGACATGGGTCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTGGCAAAGATGGAGAATGTATGCCAAAGGAAAACCAAGCAATGAAAAGAGATCCTTGTATAATAATTTGCCCAAGTTCTGTTATTCACAATTGGGAGAGTGAATTCTCTAAATGGGCAAATTTTAGCGTTTCCATTTATCATGGTGCAAACCGGGATCTAATATATGATAAATTGGAAGCTCATGGAGCAGAGATACTTATTACCAGTTTTGACACGTACAGAATTCATGGTAGCACCTTATCAGATATCAAATGGGACATTGTGATTATTGATGAGGCTCATCGGCTTAAGAATGAGAAATCAAAACTCTACAGAGCATGTTTAGAAATAAAAACCCTGAGACGTTTTGGTCTTACAGGTACCATAATGCAAAATAAGATCATGGAATTGTTTAATCTTTTTGACTGGGTTGCACCTGGATCCCTAGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCTTGAAGCATGGTCAGAGGTCAACTGCTCCTGAGAGGTTTGTCCAAATTGCCAATGAGCGAAAACAACACCTTGTGACAGTTCTTCATAAATATATGTTAAGAAGGACGAAGGATGAGACCATAGGGCATCTTATGATGGGAAAGGAAGATAATATTGTCTTTTGCACCATGAGTGAATTACAAAAGCAGGCATATAGGAGAATGTTACAACTTCCTGATGTCCAATGCCTCATAAATAAGGACTTACCTTGTAGCTGTGGAAGCCCACTCACACAAGTTGAATGTTGTAATAGGATTGTGCCAAATGGAATTATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAGGATGATATCGACAAACAAAGAAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAACATGCAGAATGAGAGTTTCATTGGTCTAAGTGATGTAAAACATTGTGGCAAAATGAGGGCACTTGAAAAACTTTTGTTCTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTGGACATATTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCAAGACTTGATGGATCCACTCCTACTAATTTACGTCAGTCTCTAGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGAGCTGGTGGGCTTGGCTTGAACCTTGTCAGTGCAAATCGTGTGGTGATATTTGATCCCAACTGGAATCCTGCTCAAGACTTACAGGCACAGGACAGGTCCTTCCGATTTGGGCAGAAGCGGCATGTTGTGGTGTTCCGGCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGGTGTACAAGCAGCAATTATCAAACATTGCCGTTTCTGGAAAAATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTTGGAGTTTGCAATTTATTTCGAGATTTATCTGATAAGCTGTTTACCAGTGATATAATTCATTTGCATGAGAAGGAGGGAATAAAACATGGGCGTAGAACAGAGCAGGAGAAAAAAACTGTTCCCTCAGAAGAGACCAATTCATTAGAATCAGAGTCTGAGAAAAGGTTATGTACAGATTCTGAGAGGACGTCAACAAATAAAGCAGATCTGAAAGACCTTGGTATTGTCTATGCTCATCGAAATGAAGACATTGTCAACGTTGGACCTGGGATTCAAGATAAGACAGATAACAGCATCTCTCAGAGTGATAGTCTAAGCATGCCAAACATCCCTGTTGTCCAGAGAAAGAAACTAGAGGGTAGAGGTAAAAGACAAATGGTTCCTTTCATCAATGAGAGGAAGAGAACCCAATATAGCCTGCTTGCTCGGTCTAGAGGAATGCAAGAGCTTGAATTTAGCAAGTGGTTATTATCAGCGACTCCAATGGAAAGAGAGAAGGTGCTTCAAGACTACAAGAGAAAGAAGATACCTAAAGGCTGA	2718	0.4198	MKKQKRASERAVSGAEPFPERLFLSMSLHALKETLKPCTSQPSSTSIGQTQSSIFRDSNLAIPRKPPKSSLTQQLRRLQDPLAVPPIQPHNSTKRERVQNSGKFEHEEEEEDGEDEEVEPELKREKFGGDKLCQLQLDHTGPFEPLVLSSDQEVPVVQVPASINCRLLEHQRVGVKFLYSLYRNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGECMPKENQAMKRDPCIIICPSSVIHNWESEFSKWANFSVSIYHGANRDLIYDKLEAHGAEILITSFDTYRIHGSTLSDIKWDIVIIDEAHRLKNEKSKLYRACLEIKTLRRFGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFRDFYDEPLKHGQRSTAPERFVQIANERKQHLVTVLHKYMLRRTKDETIGHLMMGKEDNIVFCTMSELQKQAYRRMLQLPDVQCLINKDLPCSCGSPLTQVECCNRIVPNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDIDKQRKDAEFAAAVFGPDIDLVGGNMQNESFIGLSDVKHCGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGVCNLFRDLSDKLFTSDIIHLHEKEGIKHGRRTEQEKKTVPSEETNSLESESEKRLCTDSERTSTNKADLKDLGIVYAHRNEDIVNVGPGIQDKTDNSISQSDSLSMPNIPVVQRKKLEGRGKRQMVPFINERKRTQYSLLARSRGMQELEFSKWLLSATPMEREKVLQDYKRKKIPKG	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0691	905	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	403	723	IPR027417	-
	Dere08g0691	905	Pfam	Helicase conserved C-terminal domain	556	668	IPR001650	-
	Dere08g0691	905	MobiDBLite	consensus disorder prediction	813	832	-	-
	Dere08g0691	905	FunFam	Switch 2	149	399	-	-
	Dere08g0691	905	MobiDBLite	consensus disorder prediction	755	789	-	-
	Dere08g0691	905	SMART	ultradead3	163	358	IPR014001	-
	Dere08g0691	905	PANTHER	SNF2/RAD54 FAMILY MEMBER	41	838	-	-
	Dere08g0691	905	MobiDBLite	consensus disorder prediction	817	832	-	-
	Dere08g0691	905	SMART	helicmild6	585	668	IPR001650	-
	Dere08g0691	905	Gene3D	-	412	800	IPR027417	-
	Dere08g0691	905	Pfam	SNF2-related domain	184	440	IPR000330	GO:0005524\|GO:0140658
	Dere08g0691	905	MobiDBLite	consensus disorder prediction	35	58	-	-
	Dere08g0691	905	MobiDBLite	consensus disorder prediction	35	122	-	-
	Dere08g0691	905	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	559	712	IPR001650	-
	Dere08g0691	905	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	179	350	IPR014001	-
	Dere08g0691	905	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	150	400	IPR027417	-
	Dere08g0691	905	CDD	SF2_C_SNF	550	679	-	-
	Dere08g0691	905	Gene3D	-	144	399	IPR038718	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0691	Dere-ChrDere08	10462390	10474464	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0691	571	698	RAD5 or RAD16-like Gene Family	AT1G11100	36.719	4.90e-20	94.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Dere08g0691		SNF2_N	1.3e-54	CL0023