Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0689 ATGGCATGCTTGGGATTTGATATGGTTGCCACTGAAAAATTGGATTCTTGGTTGTTTAAGAAGAGAGGACTAGGGTTTGTATTCCAGATTGTATATGGGTGGTGGGTTGTTCTGCTGTTCCTTCGTCCTGTGGCTGGTCTGAGACCATTAAGAGAAAGAACTCGATCATGGGGCGATGAGTGGCTACTTACAACAAAAGACGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAGAGGGACTTGGAATTTTTTAGATACCACAAATGGCACTTCCAGATTTTCAGACATCAGAAAAACGAATGGCAATTCCGTAATTGAATTATTTAGTACACCCACAAAAATAACTGGTGTACATTATGTTCAGGGGGTATTTATATTCCATGATGTGTTTGACAACGAATACAATGTTGGTGGTGCTCAAATCAGGGTAGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGTGGAAAAGGGGGGGAGTCGAATCAGGATGAAGATTATATCTTATCTAATCCATATCATCTGCTTGGAGTGTTCTCATCTCAGGTATTCCAAGAATCCTCAAGAGATAAGATGTGGAGAAGAAAACATTCACCAATATATGACATGGAGAAACATTGTAATATTGAGATTGCTGCACAGATTTCACGTCTGTCATCATCAAAGAATGATGGCGATCATTATCAATTCCACCTAGAAGGGTTAATGGAGAGTCCCTCAGTGGATGATGACGGGGACTGCTTCTCACCTTTAATGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACTTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAGCATAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAGGCTATAATGGATGCATATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTCGAATCCTTGTTTAATGCTTTCGCAACTGCTGCATTTTTTAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGACCTTTGAGTAGTGGGGAAGGCTGGGAGACAATGAGGCGTGAGCTATCAGTTTTATACAGTCGATTCTATGGGATCCTGTTGGGGGGAATTCTGCTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTACTTCTTATGTACTCATTTTGGATACCTCAGATAATCACCAATGTTATTCGTGATTCACGCAAACCATTGCATCCTCATTATATCTTAGGGATAACTATCACTCGGCTAGCAGTCCCATTATATATATTTGGTTGCCCAAACAACTTCATGCGCATCGAACCAGACATGAGCTGGTGTGTGTGTTTGGCTGTATTTATTGGACTTCAGGCTGCAGTTCTTCTACTTCAGAACTATCTTGGGTCCCGCTGGTTCATTCCTCGTCAGATTCTGCCTGAGAAATACAGCTATTACAGGAGGTTTGGTCAAAATACAAATCATGCTACAGATTGTGTTATATGTATGACGGCTATTGATCTTACTCAACGATCAAATGACTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGGCGCCCGCTGCCACCTGCATAG 1725 0.4075 MACLGFDMVATEKLDSWLFKKRGLGFVFQIVYGWWVVLLFLRPVAGLRPLRERTRSWGDEWLLTTKDESDQFSQWNITGTYRGTWNFLDTTNGTSRFSDIRKTNGNSVIELFSTPTKITGVHYVQGVFIFHDVFDNEYNVGGAQIRVEGVYIWPFKQLRMVANSGKGGESNQDEDYILSNPYHLLGVFSSQVFQESSRDKMWRRKHSPIYDMEKHCNIEIAAQISRLSSSKNDGDHYQFHLEGLMESPSVDDDGDCFSPLMLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSSGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITITRLAVPLYIFGCPNNFMRIEPDMSWCVCLAVFIGLQAAVLLLQNYLGSRWFIPRQILPEKYSYYRRFGQNTNHATDCVICMTAIDLTQRSNDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0689 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 574 IPR013083 -
Dere08g0689 574 SMART ring_2 524 567 IPR001841 -
Dere08g0689 574 Pfam Ring finger domain 523 568 IPR001841 -
Dere08g0689 574 SMART ringv_2 523 568 IPR011016 GO:0008270
Dere08g0689 574 PANTHER RING ZINC FINGER PROTEIN 131 573 - -
Dere08g0689 574 CDD RING-H2_TUL1-like 518 573 - -
Dere08g0689 574 ProSiteProfiles Zinc finger RING-type profile. 524 568 IPR001841 -
Dere08g0689 574 SUPERFAMILY RING/U-box 523 573 - -
Dere08g0689 574 FunFam E3 ubiquitin-protein ligase, putative 510 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0689 Dere-ChrDere08 10434501 10443360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0689 519 574 C3H Transcription Factor Family AT2G35420 35.714 1.74e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0689 08 10434501 10443360 Dere08g0689 08 10434501 10443360 ECH