LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere08g0686	ATGAGCACGATCACTATGGTCGATAATTTCCTCAAACCCAGGATCGCCGAAGATGCTCAGGATCCTCTCTTTCCTGTCCTCTGGTCGATTAGGGAAGCTCTCGACGATTCCGTCTCCGGCCGTACTTCCAATTCGGATATCATGACACTTTTACAAAGTTGCATCAGAAACTTCAAGCACAGTGTCCAGTACAAAAATGACCTCAGATTTCTTAAAATTTGGCTCTTATACATGGATGCTAATGAGGATTTTAACAAGGTGTTCAAAGAAATGCTGGATAGTAATATATGTGTCAACCAGTCTTCGCTTTATGTGTGGTCTGCATGTTTTTTTGAATCTAAAGGGAGATTGCACGACGCTCATGCAATCTATAAGCTTGGCATTTCCAGGAATGCAAAGCCAATTGAGTGGTTGATGAAGGCACATACATTGTTCCTCAACAGAATTTCTGAAATAGTGACCGTTGCTTCACGTGAGAAGACTGATGATAAAGAATCCGTGAAATTTGGAAATGGTGCCATCAATCCATGGAGTACCTCAACTGTGGATGACCTATTGGAGAAGATAAATCCTTTGATCACAAAATTTGATGGCTATTATTCAAGTACTAAAGCTTACACTGGAAAAGTGGCCTTATCTTCTTTGAAGAATTCTTCGAGGAATAAAATTGTAGAGATAGGTGGAATGAAGTATCAAATCAAGGGTTGTGCTGGACAAGGTGGTTTCGCTCAAGTATACAAGGCATATGTTAACAGTAATCCTGATGATGTTGTCGCACTGAAGATACAAAAGCCAGCTTTCCCTTGGGAATTTTACATCTACCGTCTGCTTGATCAGCGCATCTTGGACAGAGAAAGACCAAGCTATGGCTTTGCTCACAGAATTCATATCTATTCTGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGGACATTACAGGATGTCATAAACTCATACGTGGTCATAGGGAAATTTATGGAAGAAGTGTTGTGTATATACTACACCATAGAAATGCTACACATGTTGGAAACATTGCATGATGCTGGCATTATTCATGGTGATTTCAAGCCAGATAATCTGCTTATTCGCTATGCTAGGGGTGACCTTAAAGAAGATGGGTTTTTGGACAGAAGTGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCGTCTCTTTCCAGATCACACAGTATTTAATGGAGATTGCAGAACTTCTGGCTTTCGCTGCATTGAAATGCAAGAGGACAAGCCATGGAAATTTCAGGTTGACACATATGGCCTTTGTGCTGTTGTTCACACGATGTTGCATAATTCTTATATGGAGATTGTCAAAAAAAAATCATCTGATGGTGGCTACATTTATCTTCCCAGATTGCCCTTTAAACGTTACTGGAACACTGAGCTCTGGAAGACTTTCTTTATCAAGATGTTAAATCAATATCCCAGCAATGATGATAGAAAGTTGCTGCAGGAGTTGAGGATGTCCTTTGAGGATTATATGAGCTCCAATCCGCGGCTTATAAAGAAGCTAAAGGAGTTACTCGGGAAGCAAAAGGCTTCCATGTGTTCAGCTTAG	1605	0.4093	MSTITMVDNFLKPRIAEDAQDPLFPVLWSIREALDDSVSGRTSNSDIMTLLQSCIRNFKHSVQYKNDLRFLKIWLLYMDANEDFNKVFKEMLDSNICVNQSSLYVWSACFFESKGRLHDAHAIYKLGISRNAKPIEWLMKAHTLFLNRISEIVTVASREKTDDKESVKFGNGAINPWSTSTVDDLLEKINPLITKFDGYYSSTKAYTGKVALSSLKNSSRNKIVEIGGMKYQIKGCAGQGGFAQVYKAYVNSNPDDVVALKIQKPAFPWEFYIYRLLDQRILDRERPSYGFAHRIHIYSDCSILICDYLAHGTLQDVINSYVVIGKFMEEVLCIYYTIEMLHMLETLHDAGIIHGDFKPDNLLIRYARGDLKEDGFLDRSGPWRDQGLCLVDWGRGIDLRLFPDHTVFNGDCRTSGFRCIEMQEDKPWKFQVDTYGLCAVVHTMLHNSYMEIVKKKSSDGGYIYLPRLPFKRYWNTELWKTFFIKMLNQYPSNDDRKLLQELRMSFEDYMSSNPRLIKKLKELLGKQKASMCSA	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere08g0686	534	Gene3D	Transferase(Phosphotransferase) domain 1	229	532	-	-
	Dere08g0686	534	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	352	364	IPR008271	GO:0004672\|GO:0006468
	Dere08g0686	534	SMART	serkin_6	231	510	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0686	534	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	170	528	IPR015661	GO:0007094
	Dere08g0686	534	SUPERFAMILY	Protein kinase-like (PK-like)	230	508	IPR011009	-
	Dere08g0686	534	ProSiteProfiles	Protein kinase domain profile.	231	534	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0686	534	Gene3D	-	12	167	-	-
	Dere08g0686	534	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	229	531	-	-
	Dere08g0686	534	Pfam	Protein kinase domain	233	448	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere08g0686	534	SMART	mad3_bub1_i	7	128	IPR013212	-
	Dere08g0686	534	ProSiteProfiles	BUB1 N-terminal domain profile.	10	166	IPR013212	-
	Dere08g0686	534	Pfam	Mad3/BUB1 homology region 1	15	128	IPR013212	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere08g0686	Dere-ChrDere08	10391307	10395670	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere08g0686	230	376	CBL-interacting serine-threonine protein kinases	AT5G45820	28.662	2.11e-06	48.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Dere08g0686		Pkinase	1.1e-12	CL0016