Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0683 ATGGATGAGATTAAGCCAAAGCCAGTGGTGAAGAAGGAGGCTTCCGGGAATTACGATGAGCATAAAAATGGGTATTTAGGGGAGGAAGAGAGGAGGGAGAAAGAGGTGGGTTGTGCAGTAGGCGGCGGCGGCTCTGTGAAGAAAGTGCCTACTGGTGGTGGTGGAGGAAGCGGTGTGCGGTGTTGCCAAGGGGAGAACTGCAGGGCGGAGCTTAGTGATGCGAAGCCATATCATAGGAGGCACAAGGTGTGCGAATATCATGCCAAGGCTCAGGTAGTGATCGTGGGTGGCATACGACAACGTTTTTGTCAGCAATGTAGCAGATTCCATGAGTTAGGTGAATTTGATGACACGAAGAGGAGTTGCAGGAGGCGTTTGGCTGGACACAACGAACGACGAAGGAAGAGCTCCGTGTGTGAGTCTCAGGCAGAAGGGTCGAGCCAGAAAAGAAATGGGACTCAGCTGAAGGACACAGTTTGTGGTGGTGAGGTTGATGAAAGAGGGAGAATTCAGATCACCATCTAA 525 0.5143 MDEIKPKPVVKKEASGNYDEHKNGYLGEEERREKEVGCAVGGGGSVKKVPTGGGGGSGVRCCQGENCRAELSDAKPYHRRHKVCEYHAKAQVVIVGGIRQRFCQQCSRFHELGEFDDTKRSCRRRLAGHNERRRKSSVCESQAEGSSQKRNGTQLKDTVCGGEVDERGRIQITI 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0683 174 MobiDBLite consensus disorder prediction 133 155 - -
Dere08g0683 174 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Dere08g0683 174 SUPERFAMILY SBT domain 60 138 IPR036893 GO:0003677|GO:0005634
Dere08g0683 174 MobiDBLite consensus disorder prediction 140 155 - -
Dere08g0683 174 Gene3D - 53 123 IPR036893 GO:0003677|GO:0005634
Dere08g0683 174 Pfam SBP domain 62 135 IPR004333 GO:0003677
Dere08g0683 174 MobiDBLite consensus disorder prediction 1 28 - -
Dere08g0683 174 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 41 141 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0683 Dere-ChrDere08 10372791 10373780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0683 43 137 SBP-box Gene Family AT3G60030 67.368 7.45e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere08g0683 SBP 2.2e-31 No_clan