Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0677 ATGAGCAGCGTCTGTGCTGACCAGCACAAGTTCCTTCCTTTTTCCCCCAAGAAATCCCTCATCGACATCCCACCCAGGAAGCTCCTCACTCGCCGTTCTCACGACGCCGACATTTACGCCGACTCCCCCCGCTTCTCCTCCTCCGAGGAGGCCTTCCTCCAGAAGTTCCTTCCCCACAACAATCTTAACATGGATTCTGATGACGATGACTCTGATCCCTACTCCTCCGACCACTTCCGCATGTACGAGTTCAAGGTCCGCCGGTGCACTCGCAGCCGCAGCCACGACTGGACGGACTGCCCCTTCGCTCATCCTGGAGAGAAGGCTCGCCGCCGTGATCCCCGACGGTACCACTACTCTGGGACCGTCTGCCCCGAGTATCGGCGCGGCGGGTGTAGCCGTGGGGATAGCTGCGAGTTTGCGCACGGGGTGTTTGAGTGTTGGCTTCACCCTGCGAGGTACAGAACCGAGGCTTGTAAGGATGGGAAGAATTGTAAGCGTAAGGTGTGTTTCTTTGCTCACACTCCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCATTCCCACAATTCTTCGTTGGCGGATCATCACATTTCGTGCAAGAACCACAACAAATTCTTGAGCCCCACTTCGGGATCGAACAATTGCTGCTTGTTTTGTCACCATTGCGCTGCTGGTTCAACTTCCTCTCCAACCTCCACACTATTTGGGATGTCCCATATGTCGCCACCACTTTCGCCGTCGTCATCCCCTGTTTCGCCGCCTCTTTCCCCGGTGAAGCGTAGGTCGGCTGCAAATGGGGTGTCGCCAATTTCTCGATATTGTGATAGGTTTGCAGGATGCGAGACATCGAGTGGGTTGGTTAATAATCATGGGTTGGTGAGCTATAAAGATGTGCTCACTGAGTTGATGAGCTCCTTAGAGGGTCTGAATTTCATCGAAGCGAATTCTTCACCTATTTCTGCTACAAAACCGCCAAATCTGCCTTGGCTTGATGTTTCGTTAATTAGCTGTGAAGATCATCAGCAGCAGCCACAGCAGCAGTTCATTATTTCACCCGCTTCTTCTTTCAATTGTGAAGATCAGCAGCAGCAGTTCATTCTTTCACCATCTGCTCATACCCCAACAATTTCTGCAAGCTTCTCCAATGGGAAATTATATTCAAACAGCAAAATCTTCAGCAATGAGAGCAAGGCTGTTTCCAATGATAATGGGTCCTCCTGCTCAGCCCCAGATCTCGGGTGGGTCAATGAGCTGCTGATGTAG 1266 0.5174 MSSVCADQHKFLPFSPKKSLIDIPPRKLLTRRSHDADIYADSPRFSSSEEAFLQKFLPHNNLNMDSDDDDSDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSHSHNSSLADHHISCKNHNKFLSPTSGSNNCCLFCHHCAAGSTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKRRSAANGVSPISRYCDRFAGCETSSGLVNNHGLVSYKDVLTELMSSLEGLNFIEANSSPISATKPPNLPWLDVSLISCEDHQQQPQQQFIISPASSFNCEDQQQQFILSPSAHTPTISASFSNGKLYSNSKIFSNESKAVSNDNGSSCSAPDLGWVNELLM 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0677 421 ProSiteProfiles Zinc finger C3H1-type profile. 119 145 IPR000571 GO:0046872
Dere08g0677 421 SUPERFAMILY CCCH zinc finger 117 147 IPR036855 GO:0046872
Dere08g0677 421 MobiDBLite consensus disorder prediction 240 263 - -
Dere08g0677 421 Gene3D - 118 181 - -
Dere08g0677 421 PANTHER UNKEMPT FAMILY MEMBER 44 420 IPR045234 -
Dere08g0677 421 SMART c3hfinal6 118 144 IPR000571 GO:0046872
Dere08g0677 421 SMART c3hfinal6 153 176 IPR000571 GO:0046872
Dere08g0677 421 FunFam Zinc finger CCCH domain-containing protein 66 76 144 - -
Dere08g0677 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 123 143 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0677 Dere-ChrDere08 10324068 10325333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0677 70 180 C2H2 Transcription Factor Family AT5G07500 69.369 4.97e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere08g0677 zf-CCCH 1.2e-06 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0677 08 10324068 10325333 Dere08g0677 08 10324068 10325333 ECH