Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0668 ATGGCTTCGCTATTCAAGGATTTATCAAAGCTATCAGCATATCGAGATAGAAGGTTTCCTGGAACACAAGAAGAATTTGAACATGCACTCGAGACTTCCTCAACTGTCTATGTGGGCAATATGTCCTTTTACACGACAGAAGAGCAAGTTTATGAACTATTTTCACGAGCTGGAGAAATAAAGAAAATCATTATGGGCTTGGATAAGAACACAAAAACACCCTGCGGCTTTTGTTTTGTTATATACTACTCTCGTGAAGATACTGAGGATGCTGTCAAATACATAAGTGGGACAATACTTGATGACCGTCCTATACGTGTGGATTTTGACTGGGGATTCCAGGAAGGCAGGCAATGGGGCCGTGGACGTAGTGGTGGCCAGGTGCGTGATGAGTATCGCACTGATTATGATCCTGATATCCTTTCAACTGTTTGCTGTAATACGTCTTTGAAACGGGCTTTCTCATATAACTTATATTATTGA 483 0.412 MASLFKDLSKLSAYRDRRFPGTQEEFEHALETSSTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVIYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPDILSTVCCNTSLKRAFSYNLYY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0668 160 Gene3D - 5 140 IPR012677 -
Dere08g0668 160 FunFam Nuclear cap-binding protein subunit 2 4 143 - -
Dere08g0668 160 CDD RRM_NCBP2 36 113 IPR034148 -
Dere08g0668 160 SMART rrm1_1 35 108 IPR000504 GO:0003723
Dere08g0668 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Dere08g0668 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Dere08g0668 160 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Dere08g0668 160 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0668 Dere-ChrDere08 10243851 10245223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0668 34 109 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 1.72e-07 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0668 08 10243851 10245223 Dere08g0668 08 10243851 10245223 ECH