Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0665 ATGCTCGCTGTGTCACCGTATGGAAGCACAAAAGATGAAGAAGGACAAGGAGAGATGGAGAGGTTCTCGATGGAAGCCCATGAAATCGGTGACCTCTCCGAAGGGAATTTGTTAGAAAGCATCAGTTTCGATGACATCTTCGTGGGTATCCACGACGGAGATGTCTTGCCCGATTTGGAGATGGACCCCGAGATCTTCGCCGACTTCTCCGTCAGCGCCGGCGAGGACTCGGAGATGGCCACGTCATCGGTCTCGGTGGAAAATATTAACAAGGTCGACCAGAATAATATAACGACGTCGTCGACGAAGAAAGAAGATGAAGATAAAGTGTCTTCGGATTCGGGTTCGGGTTCGGGCTCGAATTCTGGAGAGGAGATAGTAAGCAAAAGGGATGAATCCGTGGTGGTTAACCCGTCGCAGAAGGAAGGTGATAAGGGAAGAAAATCATCACCTGAATCGAAAAATCCTCAAGGGAAGAAAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAACTAGGAGTGGATAAGGCTGTGCCTTCTAGAATTTTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATAGCCAGCCATCTTCAAAAATATCGATCCCACAGGAAGCATCTGCTAGCACGTGAAGCTGAAGCAGCAAACTGGAGTAAAAGAAGACAATCGTATGGTGTAGTAGCAGGTGGAGGAGGAGGCAAGAGAGACGGGAGCCCTTGGCTACCAGTAGCTCCGGCCACCATGGGTTTCCCTCCCGTGACACCACCGATGCACCACTTCAGACCCTTACATGTATGGGGCCATCCCACCATGGACCACTCCTTCATGCCCTTGTGGTCCAAGCATCTAACCCCACATTCTCCATCGCCACCGCCCCTAGCTTGGGCGCCGCCGGCTGCTCCACCGCCACCCGACCCTTCATACTGGCATCAGCGGGCTTCAAATGCACAAACGCCAGGAACAACCTGTTTTCCACAAGCTCTGACTACAACGAGATTTTCCTCTCCTCCTGTCCCGGGCATTCCACCCCATGCCATGTACAAAGTAGACCCTGGCATCGGCGTCCCCACCCGGCCACTCATTGATTTTCATCCGTCAAAGGAAAGCATAGATGCAGCCATAGGAGATGTTTTATCAAAGCCTTGGCTGCCACTTCCTCTTGGGCTTAAAGCTCCAGCGCTTGATAGTGTGATGGGAGAATTACAGAGACAAGGAGTTCCCAAAATTCCTCCCTCTTGTGCTTGA 1281 0.5137 MLAVSPYGSTKDEEGQGEMERFSMEAHEIGDLSEGNLLESISFDDIFVGIHDGDVLPDLEMDPEIFADFSVSAGEDSEMATSSVSVENINKVDQNNITTSSTKKEDEDKVSSDSGSGSGSNSGEEIVSKRDESVVVNPSQKEGDKGRKSSPESKNPQGKKKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWSKRRQSYGVVAGGGGGKRDGSPWLPVAPATMGFPPVTPPMHHFRPLHVWGHPTMDHSFMPLWSKHLTPHSPSPPPLAWAPPAAPPPPDPSYWHQRASNAQTPGTTCFPQALTTTRFSSPPVPGIPPHAMYKVDPGIGVPTRPLIDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPALDSVMGELQRQGVPKIPPSCA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0665 426 Pfam Myb-like DNA-binding domain 164 213 IPR001005 -
Dere08g0665 426 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 425 IPR044825 GO:0003700|GO:0045893
Dere08g0665 426 MobiDBLite consensus disorder prediction 78 165 - -
Dere08g0665 426 MobiDBLite consensus disorder prediction 125 165 - -
Dere08g0665 426 Gene3D - 158 219 - -
Dere08g0665 426 MobiDBLite consensus disorder prediction 78 99 - -
Dere08g0665 426 SUPERFAMILY Homeodomain-like 160 218 IPR009057 -
Dere08g0665 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 217 IPR017930 -
Dere08g0665 426 FunFam Two-component response regulator 157 220 - -
Dere08g0665 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 215 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0665 Dere-ChrDere08 10223278 10225969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0665 1 377 G2-like Transcription Factor Family AT5G44190 41.500 2.94e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere08g0665 Myb_DNA-binding 5.5e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0665 08 10223278 10225969 Dere08g0665 08 10223278 10225969 ECH