Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0660 ATGCTGATGCAACAAAAGATGGATGATGCAGAAATTTCAAATGGTTTTCCTCACCAGAACCCAACTGATCATCTTGCATCCAATAATGATAATCCTCCTGTTTTGAAGAGGAAGAGAAATCTCCCAGGAAATCCAGATCCTGAAGCAGAGGTCATAGCTCTATCGCCAAAGACTCTGATGGCCACCAACAGATTCTTGTGTGAAATTTGTGGGAAGGGTTTTCAAAGGGATCAAAATCTTCAGCTCCATCGGAGAGGACACAATCTTCCATGGAAGCTGAAACAGAGGACAAGCAAAGAACCAAGGAAGAGAGTCTATGTGTGCCCTGAAAAGACATGTGTCCACCACGACCCTTCAAGAGCTCTGGGAGACTTAACAGGGATAAAGAAGCACTTTTGCAGAAAGCATGGGGAAAAGAAGTGGAAGTGTGAGAAGTGCACAAAGCGATATGCTGTTCAGTCAGACTGGAAAGCCCACTCTAAGACCTGTGGCACCAGAGAATACAAATGTGATTGTGGGACTATCTTTTCACGGAGAGATAGTTTCATCACTCACAGGGCATTCTGCGATGCCTTAGCAGAAGAGACAGCTAGAGTAAATGCAGCATCCTCGATGAACTCTTTAGTGGGCTACAACATGATGGGAAATTCCCAAGGGCCAGCCATGGCCACGCATTTTCCTTCAATTTTCAAGCCAATTTCAAACACTGGTGCTGAAACAAATCATCAAACACCTAGGGGACTATCTCTATGGATGGGTCAAACTCCAGTACCTCAAGCTCACGACACAATGGCCAATAATGATAATAATAACAATAACCTGTTTGAGATTCACCAACTTGGGTCGGTCACTAGCTCATCGTCAGGATCAGTATATGGGAACAACCCACTTGTTTCATGCTCAAATCCCCGTCTGAATTGGGTGTTTGGAAGTAATAAGCTTCCCTCCAATAGTAGTCATCAAGAGCTGATTACTGTTCCTTCCTTGTACAGCTCCCAACATCATCAATCCCATCATCAAACATCCTCGGCAAACATGTCGGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATCGGAGCAACTTCAACCGACCCATCATTCCTAGGAAGCTTAGGGTTGAAATGCAGTAATAATCAGGACCAAGATGGGAACAAATTTTGCGGAATCTATGGATCAGGTTCATTACTCGTGTCTAGCTTAGCAAGCGAGACAGAAAACCCTGCAAAACGCAGGAACATACAGAATGACGAGAGCACTGCAGGGGAGCAAACTAGGGATTTTCTGGGTGTAGGAGTGGAATCCATTTGCCATCCTTCTCAAATCAACGGATGGATTTGA 1338 0.4462 MLMQQKMDDAEISNGFPHQNPTDHLASNNDNPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEPRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCTKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSMNSLVGYNMMGNSQGPAMATHFPSIFKPISNTGAETNHQTPRGLSLWMGQTPVPQAHDTMANNDNNNNNLFEIHQLGSVTSSSSGSVYGNNPLVSCSNPRLNWVFGSNKLPSNSSHQELITVPSLYSSQHHQSHHQTSSANMSATALLQKAAQIGATSTDPSFLGSLGLKCSNNQDQDGNKFCGIYGSGSLLVSSLASETENPAKRRNIQNDESTAGEQTRDFLGVGVESICHPSQINGWI 445
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0660 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Dere08g0660 445 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Dere08g0660 445 Gene3D Classic Zinc Finger 99 189 - -
Dere08g0660 445 MobiDBLite consensus disorder prediction 15 29 - -
Dere08g0660 445 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Dere08g0660 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 433 IPR031140 -
Dere08g0660 445 SMART c2h2final6 106 136 IPR013087 -
Dere08g0660 445 SMART c2h2final6 65 87 IPR013087 -
Dere08g0660 445 SMART c2h2final6 141 161 IPR013087 -
Dere08g0660 445 Gene3D Classic Zinc Finger 61 88 - -
Dere08g0660 445 MobiDBLite consensus disorder prediction 1 46 - -
Dere08g0660 445 FunFam protein indeterminate-domain 12-like 44 112 - -
Dere08g0660 445 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere08g0660 Dere-ChrDere08 10179050 10181126 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0660 46 445 IDZ Gene Family AT5G44160 53.564 6.31e-143 413
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere08g0660 None None None
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0660 08 10179050 10181126 Dere08g0660 08 10179050 10181126 ECH