Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0630 ATGGAAATTACAGAAAGGAGCAAAACAATGGAAGGTTTTGATTGGAGCTCAGGCATTTGTGGAAATGCCTCAGAGAGAATTAGTACTTATTTTATGGCTAAGTCTGGCGTTTTAGAAAGTGGGTTTGCTTCTTCTTCATCTCTGGTTTTGGATAGCCAGATAGACGAGCTCGTGGAGACTTCTGTCAAAGAACGAAGCAAGGGTGTGTCCTCTGAGAGAAGCATTGCTGCTTTGAAGAACCATAGCGAAGCAGAACGCAGAAGAAGAGCTAGGATTAATGCACATCTTGATACTCTTCGCACAGTAATTCCAGGAGCTGACAAGATGGACAAAGCATCATTACTTGCAGAGGTTATCAGATATTTGAAGGAGCTAAAAGGGAATGCAGCACAAGCTTGTGAAGGCTTGATGATACCAAAGGACAATGATGAAATAAGAGTTGAAGAAGAGGGTGGATCTAATGGTTTCCCTTATTCGATTAAGGCATCTCTGTGTTGTGAATATAAACCTGGGTTATTGTCTGATATAAGACAAGCACTTGATGCTCTCAATGTTATGATAACGAGGGCTGAAATTGCAACCTTGGGAGGGAGGATGAAGAATGTCTTTATTATAATAAGCTGCAAAGAGCAGAACATTGAAGATGCTGAATATCGTCAGTTTCTTGCTGGCTCTGTTCATCAAGCTCTTAGGTCTGTGCTTGATAGATTCTTTGCTTCAGAGGACCTAATAGGAATCAGTAAGAGAAGGAGGATTTCTATATTTAGTTCATCATCTCTAGGGGAATTCTGCTCGTCTTTAAATCTATCTGTTGTTCTACTCGCTGCCTTCGAATTTGCATTTTCTCTATTTTCGTCAATCATGGACAAGGAGGAGAAGAAATCTGACATTCCGAAAATTGGAGACGAAAGCCAAGAGACTGATGAGGCGATAGAGCTCGTTCTCTTTCAAGTGTCTGAATGTTACGTGTACATGATACCCCCCAGGAAGAGTGCAGCTTCTTACAGGGCTGATGAATGGGATGTGAACAAATGGGCATGGGAAGGGACATTGAAAGTCATTAGCATGGGAGAAGTATGCATTATAAAACTTGAAGATAAGAAAACAGGTGAATTATATGCTCGGGCATTTTTAAGAAAGGGAGAGCCGCATCCTGTGGAACCTGTCATTGATAGTAGCAGGTATTTTGTTCTTCGCATAGAAGAGAACATAGGAGGCCGTCTTCGGCATGCCTTCATTGGTATAGGATTCCGAGAAAGAACAGAGGCTTATGACTTCCAAGCTGCCTTGCATGACCATATGAAATATCTGAACAAAAAGAAAGCTGCAGAAGAGATGGAACAACATTACCAGCAAACTTCCTCAGTTGATTACAGTTTAAAAGATGGAGAGACTCTTAAACTGCAAATTAAGACCAACAAAAGTGGCCACAATGTAAAATCTAAGTTGCTTGACCAGGGTCTGAATAGCACCTCAGAAGAAAAGGGTGTTACAAAAGAATCTAAACTTAGCATTAAGTTACCACCACCTCCTCCAGCACCAGTTTCTCCCACCACTACCTCGCAGAAGTCTCCAACAAATTTCAGTGCTGAGAAAAGTCCTAAAGATGTGACCCCTAAATTAGACAAAGGAGACAGAGAGCATCAGAATTTTCCAGAAAATCAGAGCACGCAGGATATACCAGATGATGATTTTGGCGATTTTCAAACAGCTGGTTAA 1719 0.413 MEITERSKTMEGFDWSSGICGNASERISTYFMAKSGVLESGFASSSSLVLDSQIDELVETSVKERSKGVSSERSIAALKNHSEAERRRRARINAHLDTLRTVIPGADKMDKASLLAEVIRYLKELKGNAAQACEGLMIPKDNDEIRVEEEGGSNGFPYSIKASLCCEYKPGLLSDIRQALDALNVMITRAEIATLGGRMKNVFIIISCKEQNIEDAEYRQFLAGSVHQALRSVLDRFFASEDLIGISKRRRISIFSSSSLGEFCSSLNLSVVLLAAFEFAFSLFSSIMDKEEKKSDIPKIGDESQETDEAIELVLFQVSECYVYMIPPRKSAASYRADEWDVNKWAWEGTLKVISMGEVCIIKLEDKKTGELYARAFLRKGEPHPVEPVIDSSRYFVLRIEENIGGRLRHAFIGIGFRERTEAYDFQAALHDHMKYLNKKKAAEEMEQHYQQTSSVDYSLKDGETLKLQIKTNKSGHNVKSKLLDQGLNSTSEEKGVTKESKLSIKLPPPPPAPVSPTTTSQKSPTNFSAEKSPKDVTPKLDKGDREHQNFPENQSTQDIPDDDFGDFQTAG 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0630 572 MobiDBLite consensus disorder prediction 481 572 - -
Dere08g0630 572 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 305 570 - -
Dere08g0630 572 Pfam Protein of unknown function (DUF1681) 311 471 IPR012466 GO:0006897|GO:0016020
Dere08g0630 572 Gene3D - 72 133 IPR036638 GO:0046983
Dere08g0630 572 MobiDBLite consensus disorder prediction 519 533 - -
Dere08g0630 572 SMART finulus 82 131 IPR011598 GO:0046983
Dere08g0630 572 MobiDBLite consensus disorder prediction 535 552 - -
Dere08g0630 572 FunFam Adaptin ear-binding coat-associated protein 315 440 - -
Dere08g0630 572 SUPERFAMILY PH domain-like 307 439 - -
Dere08g0630 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
Dere08g0630 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 127 IPR036638 GO:0046983
Dere08g0630 572 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Dere08g0630 572 CDD PHear_NECAP 314 435 IPR012466 GO:0006897|GO:0016020
Dere08g0630 572 Gene3D - 315 440 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0630 Dere-ChrDere08 9673005 9678346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0630 11 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 35.081 2.94e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere08g0630 DUF1681 2.9e-50 CL0266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0630 08 9673005 9678346 Dere08g0630 08 9673005 9678346 ECH