Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0624 ATGTCGCAAACTGGGAAGTCTATGCAAGAACAGGGCAATGATCCTCTTACGACACGATTCCGTGATTCGTTGAGTTGTGAAGAGAACAAGCCCGATTTCAAAGAACTCGATCTGGGTTCCCCCGTTTCGCCATTGAAAATCCGCGGCGTAGGTAATGCCGGCGGCGGCAGTGTTGCTGCCACCACTTCGAGCTCAAGTTCAAGTTCCTCCGGCTCAGTCTCAGGCAGAAGCAACGCTCCCAGGTTGCCCAGAAGACCCGACGGAAAACCAAACCACCATTCCGGGGAGCTCACTGGCTATTTCGATACCAGCCCAAATGCCTCCGAGAGCCTCCGATCCGCTTCAGCAATGCCCAATTCCAAGCCGGGTCATCGGAGATCGGTTTCCGCCGGAGCCCCATTAATCTACTCCGGTGGAAATTTCAGCAGTACGGGGAGTAATATTTGCTCGAGCGGTGCAACTTCAGGGACCAATTTGCTCCCAACTGGTAATATTTGTCCTAGCGGGAAGATCCTCAAATCGGGTTTGGCGTCTCGAGCTTCCAATAGAACTGATGTGTTGGGTTCTGGAACAGCGAACTATGGCCATGGTAATATAATGCGTGGTGGCACGAAATTGAGCAATCCTGGGCTCGTTGCGGATGACAATGTGGCCGGGAATTCTCAGGTTGGAGGAGCATCGGGGGTTGTAAGGCGAGCACTGGGTGGTTCTGATCCAGAGGAGGTGAAGAAGGCTGGGAATGAGTTATATAGAAGTGGTAATTTTGTGGAGGCATTATCATTATACGATCGTGCTATTTCGATATCGCCGAACAATGCGGCTTACCGGAGTAACCGGGCGGCGGCATTGACAGCGTTGGGCAGGCTGGCTGAGGCAGCAAAGGAGTGCGAAGAGGCTGTGAAGTTGGAACCTGGTTATGCCAGGGCGCATCAGAGGCTGGCTTCTCTTTGCCTGCGCTTTGGGCAAGTGGAAAATGCCAAGCGTCACCTCTCTCTCCCTGGGCAACCTGTGGATCAATCTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATCTAAACCGATGTGCAGAGGCAAGAAAGATTGGTGATTGGAAGATTGCACTTAGAGAATCGGATGCAGCCATTGCAGTTGGAGCAGATTTCTCACCTCAGTTTTTTGCTTGTAAAGCGGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAGTCCAGCCTTTCAAACATTCCCAAGTTAGAAGGTTGTCCTTCATCCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCCTATGTACACTTTGTTCGCGCACAGGTTGAGATGGCCTCAGGAAGGTTCGAGAATGCAGTGGCAGCAGCAGAAAAGGCAAGAATGATAGATTACAATAATACAGAAATCGAGAGGGCTCTGAATACTGTTAAAATGGTAGCAAGAGCTCGTTCAAAGGGCAATGATCTTTTTAGCTCTGGCAAATTTTCTGAAGCTTGTTCTGCTTACGGAGAAGGCCTCAAATACGACAATTCGAACCATGTTCTATATTGTAATAGAGCTGTTTGCTGGTCTAAACTTGGACTATGGGAAAAATCTGTTGAGGATTGCAACCAAGCTCTCAACATTCAACCAAATTACACCAAAGCCCTCTTTCGCAGGGCTGTGTCAAATACAAAGCTTGAAAGATGGGCAGAAGTTGTGAAAGATTATGAGGCCTTAAGACGAGAACTCCCGGGAGACAATGAAGTTGTTGAATCTCTTCGTAAGGCTCAACTAGCATTGAAAAAATCTCGTGAGGAGGACTATGCTGGGAAGCTTGAAGTTGAAGTTGAAGCTGTCTCTTCATTGGATGAATTTAAAGCTGCTATCGCTTGTGCTGGTATTTCAGTAGTTCATTTCAAAGAGGCATCAAATGAACTATGTGAAGAAATATCCCCATTCATCAATATGCTGTGCGTGAGATACCCATCTGTTAAATTTATCAAGGTGGACGTGGAGGAGTGTCTAGCTATAGCAAGAGCAGAGAGCATAAGAACTGTCCCAACCTTCAAAATTTACAAAAATGGAAAGAAGGTGAAGGAGATGATTCGTCCAACGCATCAGGTCTTAGAGGAGTCTGTGAGAAACTGTAGTTTCCTCTAG 2136 0.4747 MSQTGKSMQEQGNDPLTTRFRDSLSCEENKPDFKELDLGSPVSPLKIRGVGNAGGGSVAATTSSSSSSSSGSVSGRSNAPRLPRRPDGKPNHHSGELTGYFDTSPNASESLRSASAMPNSKPGHRRSVSAGAPLIYSGGNFSSTGSNICSSGATSGTNLLPTGNICPSGKILKSGLASRASNRTDVLGSGTANYGHGNIMRGGTKLSNPGLVADDNVAGNSQVGGASGVVRRALGGSDPEEVKKAGNELYRSGNFVEALSLYDRAISISPNNAAYRSNRAAALTALGRLAEAAKECEEAVKLEPGYARAHQRLASLCLRFGQVENAKRHLSLPGQPVDQSELQKLRLLEKHLNRCAEARKIGDWKIALRESDAAIAVGADFSPQFFACKAEAYLKLHQLEDAESSLSNIPKLEGCPSSCSQTKFFGMVGEAYVHFVRAQVEMASGRFENAVAAAEKARMIDYNNTEIERALNTVKMVARARSKGNDLFSSGKFSEACSAYGEGLKYDNSNHVLYCNRAVCWSKLGLWEKSVEDCNQALNIQPNYTKALFRRAVSNTKLERWAEVVKDYEALRRELPGDNEVVESLRKAQLALKKSREEDYAGKLEVEVEAVSSLDEFKAAIACAGISVVHFKEASNELCEEISPFINMLCVRYPSVKFIKVDVEECLAIARAESIRTVPTFKIYKNGKKVKEMIRPTHQVLEESVRNCSFL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0624 711 Gene3D Glutaredoxin 596 710 - -
Dere08g0624 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 706 IPR044534 -
Dere08g0624 711 FunFam TPR repeat-containing thioredoxin TTL4 603 709 - -
Dere08g0624 711 MobiDBLite consensus disorder prediction 1 20 - -
Dere08g0624 711 SUPERFAMILY TPR-like 240 330 IPR011990 GO:0005515
Dere08g0624 711 Gene3D Tetratricopeptide repeat domain 237 595 IPR011990 GO:0005515
Dere08g0624 711 MobiDBLite consensus disorder prediction 21 35 - -
Dere08g0624 711 CDD TRX_family 615 705 - -
Dere08g0624 711 SUPERFAMILY TPR-like 348 474 IPR011990 GO:0005515
Dere08g0624 711 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Dere08g0624 711 Pfam TPR repeat 246 287 - -
Dere08g0624 711 Pfam Thioredoxin 614 698 IPR013766 -
Dere08g0624 711 MobiDBLite consensus disorder prediction 97 122 - -
Dere08g0624 711 SUPERFAMILY Thioredoxin-like 612 702 IPR036249 -
Dere08g0624 711 SUPERFAMILY TPR-like 476 589 IPR011990 GO:0005515
Dere08g0624 711 SMART tpr_5 273 306 IPR019734 GO:0005515
Dere08g0624 711 SMART tpr_5 431 464 IPR019734 GO:0005515
Dere08g0624 711 SMART tpr_5 545 578 IPR019734 GO:0005515
Dere08g0624 711 SMART tpr_5 511 544 IPR019734 GO:0005515
Dere08g0624 711 SMART tpr_5 239 272 IPR019734 GO:0005515
Dere08g0624 711 SMART tpr_5 477 510 IPR019734 GO:0005515
Dere08g0624 711 MobiDBLite consensus disorder prediction 56 77 - -
Dere08g0624 711 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0624 Dere-ChrDere08 9448957 9452015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0624 476 549 U-box Gene Family AT3G07370 32.432 7.30e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g1248 07 16177014 16180258 Dere08g0624 08 9448957 9452015 CCT
Dere08g0624 08 9448957 9452015 Dere08g0624 08 9448957 9452015 ECH