Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere08g0602 ATGAGCAGCAACTCCAACAATTTCACACCTTTACCTGGGGCTCGGCGAACTGGTGTTAGAGCCTATGATACCCATCTTCCCAATGACAGAGGTTACGATGAGGTGCCTGAGTTTTATCAATCTCTTTCTTTCCAAGCTACTCCTGATGACAGGATTTCGGGCGTGCAACATCCACCATGGTTGATGGAAGAAAGAACACCTTCAGGACTCAACAACATACCCAATTTTCTAGCGCAACCACATAGCAGACAACAAATTAATGTTCTCAATGGGGGCATAAGAAGGGGATTGAACCCCAGGTTCAGAGGGATTTTCCAGCAGTCACCTCCAAGAGCGGTTGAAAATCCCAGATCAGCGGCCTTGAGCACACTAAAGAAAGAAATATATGATAGTCCGAAGATTTTACCAAAGAGAGTAAGTTTGTGTTACAAAGACAGCGTTATGAATGCTTTAAAAGAGAGAGAAAGGGAAAAGCAAGAACTTGGAAAGAGATGTGCTATTTGCTTGGAAGATTTTGAACCTAAGGAGGAGGTGTTGCTCACTCCATGCAAACATGTGTTTCATGAGGATTGTATATTACCATGGGTAACAAGCAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTAAGCGGGCGAGGGAGCACCCATCATCCTTCAACAACAATAACAATATTGCCATTATGGCACCCAATGACCTGATTGCAGGAGAGCTTCTATCAATTTTCAGAGCCATGCAAGAATCTTTCCAATTGGGCACTGGAACTTATTAA 774 0.4367 MSSNSNNFTPLPGARRTGVRAYDTHLPNDRGYDEVPEFYQSLSFQATPDDRISGVQHPPWLMEERTPSGLNNIPNFLAQPHSRQQINVLNGGIRRGLNPRFRGIFQQSPPRAVENPRSAALSTLKKEIYDSPKILPKRVSLCYKDSVMNALKEREREKQELGKRCAICLEDFEPKEEVLLTPCKHVFHEDCILPWVTSKGQCPVCRFVICKRAREHPSSFNNNNNIAIMAPNDLIAGELLSIFRAMQESFQLGTGTY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere08g0602 257 ProSiteProfiles Zinc finger RING-type profile. 165 206 IPR001841 -
Dere08g0602 257 SMART ringv_2 164 206 IPR011016 GO:0008270
Dere08g0602 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 222 IPR013083 -
Dere08g0602 257 SMART ring_2 165 205 IPR001841 -
Dere08g0602 257 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 84 207 - -
Dere08g0602 257 Coils Coil 144 164 - -
Dere08g0602 257 MobiDBLite consensus disorder prediction 1 25 - -
Dere08g0602 257 Pfam Ring finger domain 164 206 IPR001841 -
Dere08g0602 257 FunFam RING/U-box superfamily protein 149 224 - -
Dere08g0602 257 SUPERFAMILY RING/U-box 153 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere08g0602 Dere-ChrDere08 9123921 9125697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere08g0602 81 253 C3H Transcription Factor Family AT3G58720 42.632 1.42e-37 131